RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 POU4F1Q01851 419 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 CKAP4Q07065 602 aaKnown RBP13.73□□□□□ -0.21
PNKP-202ENST00000593706 SLC13A2Q13183 592 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 TERF2Q15554 542 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 TESK1Q15569 626 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 TSNQ15631 228 aaKnown RBP13.73□□□□□ -0.21
PNKP-202ENST00000593706 C3orf62Q6ZUJ4 267 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 MDGA2Q7Z553 956 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 CTAGE6Q86UF2 777 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 TMEM200AQ86VY9 491 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 KLHDC8AQ8IYD2 350 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 CA13Q8N1Q1 262 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 ARMC10Q8N2F6 343 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 MARVELD2Q8N4S9 558 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 ZFP62Q8NB50 900 aaPredicted RBP13.73□□□□□ -0.21
PNKP-202ENST00000593706 ACBD4Q8NC06 268 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 CCT6BQ92526 530 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 RND1Q92730 232 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 EGFL8Q99944 293 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 TREX2Q9BQ50 279 aaPredicted RBP13.73□□□□□ -0.21
PNKP-202ENST00000593706 LRRC1Q9BTT6 524 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 DERL2Q9GZP9 239 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 KLHL31Q9H511 634 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 CAB39LQ9H9S4 337 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 KCMF1Q9P0J7 381 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 MMACHCQ9Y4U1 282 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 KCNE2Q9Y6J6 123 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 NINQ8N4C6 2090 aa13.73□□□□□ -0.21
PNKP-202ENST00000593706 NAV3Q8IVL0 2385 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 A0A0G2JN53 185 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 SERPINA6P08185 405 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 GP5P40197 560 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 MAGEA4P43358 317 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 PLGLB1Q02325 96 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 KBTBD12Q3ZCT8 623 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 C8orf74Q6P047 294 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 PAOXQ6QHF9 649 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 NXPE4Q6UWF7 544 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 ADAMTSL2Q86TH1 951 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.72□□□□□ -0.21
PNKP-202ENST00000593706 PSD4Q8NDX1 1056 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 C16orf52Q8NHV5 167 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 ASB15Q8WXK1 588 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 NCLNQ969V3 563 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 GAL3ST3Q96A11 431 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 UBXN10Q96LJ8 280 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 KCNJ16Q9NPI9 418 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 NPDC1Q9NQX5 325 aaPredicted RBP13.72□□□□□ -0.21
PNKP-202ENST00000593706 RNF6Q9Y252 685 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 SLC22A14Q9Y267 594 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 MRPS33Q9Y291 106 aaKnown RBP13.72□□□□□ -0.21
PNKP-202ENST00000593706 OARD1Q9Y530 152 aa13.72□□□□□ -0.21
PNKP-202ENST00000593706 FLNAP21333 2647 aaKnown RBP13.71□□□□□ -0.21
PNKP-202ENST00000593706 A0A088AWK7 358 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 FAM166BA8MTA8 275 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 A8MVJ9 347 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 CLDN4O14493 209 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 PHGDHO43175 533 aaKnown RBP13.71□□□□□ -0.21
PNKP-202ENST00000593706 ERI3O43414 337 aaKnown RBP13.71□□□□□ -0.21
PNKP-202ENST00000593706 KRT38O76015 456 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 URI1O94763 535 aaPredicted RBP13.71□□□□□ -0.21
PNKP-202ENST00000593706 ZNF10P21506 573 aaPredicted RBP13.71□□□□□ -0.21
PNKP-202ENST00000593706 SLC6A12P48065 614 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 BTN3A2P78410 334 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 EFTUD2Q15029 972 aaKnown RBP eCLIP13.71□□□□□ -0.217e-7■■■■■ 39.5
PNKP-202ENST00000593706 UBAP2Q5T6F2 1119 aaKnown RBP13.71□□□□□ -0.21
PNKP-202ENST00000593706 FRA10AC1Q70Z53 315 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 MMGT1Q8N4V1 131 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 FAM47BQ8NA70 645 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 NOA1Q8NC60 698 aaKnown RBP13.71□□□□□ -0.21
PNKP-202ENST00000593706 OR52N2Q8NGI0 321 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 OR5M3Q8NGP4 307 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 CDKL2Q92772 493 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 ZNF559Q9BR84 538 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 DEFB127Q9H1M4 99 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 PRTFDC1Q9NRG1 225 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 HPF1Q9NWY4 346 aa13.71□□□□□ -0.21
PNKP-202ENST00000593706 YARS2Q9Y2Z4 477 aaKnown RBP13.71□□□□□ -0.21
PNKP-202ENST00000593706 VPS13CQ709C8 3753 aa13.71□□□□□ -0.22
PNKP-202ENST00000593706 B3GALT2O43825 422 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 FAM155BO75949 473 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 OR2J2O76002 312 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 WDR47O94967 919 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 SMIM10L1P0DMW3 83 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 CD1EP15812 388 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 IGFBP2P18065 325 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 MSX1P28360 303 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 ECHS1P30084 290 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 PPP2R1BP30154 601 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 STX2P32856 288 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 HNMTP50135 292 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 HSD17B7P56937 341 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 PPIAP62937 165 aaKnown RBP13.7□□□□□ -0.22
PNKP-202ENST00000593706 PMPCAQ10713 525 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 MYBPHQ13203 477 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 NAB1Q13506 487 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 C18orf21Q32NC0 220 aaPredicted RBP13.7□□□□□ -0.22
PNKP-202ENST00000593706 ACAD11Q709F0 780 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 CCDC25Q86WR0 208 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 RELL1Q8IUW5 271 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms