RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 ADAMTS18Q8TE60 1221 aa16.27■□□□□ 0.2
SMG6-214ENST00000573827 SLC44A1Q8WWI5 657 aa16.27■□□□□ 0.2
SMG6-214ENST00000573827 MRRFQ96E11 262 aaKnown RBP16.27■□□□□ 0.2
SMG6-214ENST00000573827 FRMD6Q96NE9 622 aa16.27■□□□□ 0.2
SMG6-214ENST00000573827 CDC42EP4Q9H3Q1 356 aaKnown RBP16.27■□□□□ 0.2
SMG6-214ENST00000573827 PRTFDC1Q9NRG1 225 aa16.27■□□□□ 0.2
SMG6-214ENST00000573827 TSC22D4Q9Y3Q8 395 aa16.27■□□□□ 0.2
SMG6-214ENST00000573827 A0A096LPK6 155 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 RTCAO00442 366 aaKnown RBP16.26■□□□□ 0.19
SMG6-214ENST00000573827 PRKNO60260 465 aaPredicted RBP16.26■□□□□ 0.19
SMG6-214ENST00000573827 MYO1DO94832 1006 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 KLHL2O95198 593 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 CRYABP02511 175 aaKnown RBP16.26■□□□□ 0.19
SMG6-214ENST00000573827 S100BP04271 92 aaPredicted RBP16.26■□□□□ 0.19
SMG6-214ENST00000573827 ATP5A1P25705 553 aaKnown RBP16.26■□□□□ 0.19
SMG6-214ENST00000573827 COL8A1P27658 744 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 MSH2P43246 934 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 TAS2R50P59544 299 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 ACAP2Q15057 778 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 RNFT1Q5M7Z0 435 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 GRHL2Q6ISB3 625 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 TRIM40Q6P9F5 258 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 CHERPQ8IWX8 916 aaKnown RBP16.26■□□□□ 0.19
SMG6-214ENST00000573827 RNF175Q8N4F7 328 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 SUN3Q8TAQ9 357 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 KCNC2Q96PR1 638 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 MAPKAP1Q9BPZ7 522 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 ZNF717Q9BY31 904 aaPredicted RBP16.26■□□□□ 0.19
SMG6-214ENST00000573827 LYRM4Q9HD34 91 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 KLHL1Q9NR64 748 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 OPTCQ9UBM4 332 aa16.26■□□□□ 0.19
SMG6-214ENST00000573827 CTNSO60931 367 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 UNC5CO95185 931 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 SP1P08047 785 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 PCBP2Q15366 365 aaKnown RBP eCLIP16.25■□□□□ 0.19
SMG6-214ENST00000573827 FAM83EQ2M2I3 478 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 TMEM35AQ53FP2 167 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 TECRLQ5HYJ1 363 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 C1QL3Q5VWW1 255 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 MED27Q6P2C8 311 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 GFRALQ6UXV0 394 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 ACOT4Q8N9L9 421 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 ARMC2Q8NEN0 867 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 TBCDQ9BTW9 1192 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 ZNF358Q9NW07 568 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 LRFN1Q9P244 771 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 PKDREJQ9NTG1 2253 aa16.25■□□□□ 0.19
SMG6-214ENST00000573827 GTF3C1Q12789 2109 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 A0A088AWK7 358 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 TRBV11-1A0A0K0K1C0 115 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 SYCE1LA8MT33 242 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 NME2P1O60361 137 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 ZG16O60844 167 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 EPB42P16452 691 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 ZNF10P21506 573 aaPredicted RBP16.24■□□□□ 0.19
SMG6-214ENST00000573827 NME2P22392 152 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 HIST1H1TP22492 207 aaPredicted RBP16.24■□□□□ 0.19
SMG6-214ENST00000573827 HPDP32754 393 aaPredicted RBP16.24■□□□□ 0.19
SMG6-214ENST00000573827 SERPINB8P50452 374 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 HLCSP50747 726 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 ALDH18A1P54886 795 aaKnown RBP16.24■□□□□ 0.19
SMG6-214ENST00000573827 ZRSR2Q15696 482 aaKnown RBP16.24■□□□□ 0.19
SMG6-214ENST00000573827 PFKFB4Q16877 469 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 DEPDC1Q5TB30 811 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 KHDRBS2Q5VWX1 349 aaKnown RBP16.24■□□□□ 0.19
SMG6-214ENST00000573827 SLC25A25Q6KCM7 469 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 GALNTL5Q7Z4T8 443 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 CLNKQ7Z7G1 428 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 TEX9Q8N6V9 391 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 HUS1BQ8NHY5 278 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 PTPMT1Q8WUK0 201 aaPredicted RBP16.24■□□□□ 0.19
SMG6-214ENST00000573827 UBE2E3Q969T4 207 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 NCLNQ969V3 563 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 ANKRD9Q96BM1 317 aaPredicted RBP16.24■□□□□ 0.19
SMG6-214ENST00000573827 SORBS1Q9BX66 1292 aaKnown RBP16.24■□□□□ 0.19
SMG6-214ENST00000573827 DEFB126Q9BYW3 111 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 ADAP2Q9NPF8 381 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 PNO1Q9NRX1 252 aaKnown RBP16.24■□□□□ 0.19
SMG6-214ENST00000573827 SEC14L3Q9UDX4 400 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 VTI1BQ9UEU0 232 aa16.24■□□□□ 0.19
SMG6-214ENST00000573827 CLDN4O14493 209 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 SLC25A12O75746 678 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 SIX3O95343 332 aaPredicted RBP16.23■□□□□ 0.19
SMG6-214ENST00000573827 ACSL3O95573 720 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 TGFB1P01137 390 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 MYBL2P10244 700 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 CD46P15529 392 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 TYK2P29597 1187 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 SERPINB1P30740 379 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 PHBP35232 272 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 PIK3CBP42338 1070 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 CLCN2P51788 898 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 IGLV3-21P80748 117 aaPredicted RBP16.23■□□□□ 0.19
SMG6-214ENST00000573827 SLC13A2Q13183 592 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 ELAVL1Q15717 326 aaKnown RBP16.23■□□□□ 0.19
SMG6-214ENST00000573827 HIST2H2ACQ16777 129 aaPredicted RBP16.23■□□□□ 0.19
SMG6-214ENST00000573827 HIST2H2AA3Q6FI13 130 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 C16orf47Q6ZP98 133 aaPredicted RBP16.23■□□□□ 0.19
SMG6-214ENST00000573827 TMEM151AQ8N4L1 468 aa16.23■□□□□ 0.19
SMG6-214ENST00000573827 THAP3Q8WTV1 239 aaPredicted RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms