RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 ABI3Q9P2A4 366 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 CREBBPQ92793 2442 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 HIVEP3Q5T1R4 2406 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 A0A088AWK7 358 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 TBX6O95947 436 aaPredicted RBP12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 PYGBP11216 843 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 EPB42P16452 691 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 ZNF10P21506 573 aaPredicted RBP12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 PPP2R1BP30154 601 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 ALDH18A1P54886 795 aaKnown RBP12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 MTTPP55157 894 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 RAB38P57729 211 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 SLC13A2Q13183 592 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 SETDB1Q15047 1291 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 MEP1AQ16819 746 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 HIST2H2BCQ6DN03 193 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 MED27Q6P2C8 311 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 ABHD17CQ6PCB6 329 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 SH2D5Q6ZV89 423 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 TMEM151AQ8N4L1 468 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 OR2W6PQ8NHA6 318 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 SSC4DQ8WTU2 575 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 THAP3Q8WTV1 239 aaPredicted RBP12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 QRFPRQ96P65 431 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 TAAR6Q96RI8 345 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 CSF3RQ99062 836 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 NPAS2Q99743 824 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 MRPL57Q9BQC6 102 aaKnown RBP12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 HES7Q9BYE0 225 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 EHD1Q9H4M9 534 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 MMP25Q9NPA2 562 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 OLAHQ9NV23 265 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 XPR1Q9UBH6 696 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 OSGIN2Q9Y236 505 aa12.77□□□□□ -0.37
VPS9D1-204ENST00000565023 ICE1Q9Y2F5 2266 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 A0A1W2PPM1 405 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 TCRBV16S1A1N1A0A5B0 115 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 SAGE2PA6NJ88 616 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 SMIM23A6NLE4 172 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 GABRR3A8MPY1 467 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 E2F3O00716 465 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 PRAMEF2O60811 474 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 MYO1DO94832 1006 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 RASAL1O95294 804 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 SIX3O95343 332 aaPredicted RBP12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 GSTM2P28161 218 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 ID2Q02363 134 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 TGM3Q08188 693 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 TUBA3CQ13748 450 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 ZNF766Q5HY98 468 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 TUBA3EQ6PEY2 450 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 RIBC1Q8N443 379 aaPredicted RBP12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 SLC5A8Q8N695 610 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 BCORP1Q8N888 145 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 ST6GALNAC3Q8NDV1 305 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 ZNF473Q8WTR7 871 aaKnown RBP12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 PHF21BQ96EK2 531 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 WDR34Q96EX3 536 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 SIGLEC12Q96PQ1 595 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 SERINC2Q96SA4 455 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 UTP23Q9BRU9 249 aaKnown RBP12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 TMEM109Q9BVC6 243 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 SORBS1Q9BX66 1292 aaKnown RBP12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 MS4A8Q9BY19 250 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 ROPN1BQ9BZX4 212 aaPredicted RBP12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 PITHD1Q9GZP4 211 aaPredicted RBP12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 MRPL46Q9H2W6 279 aaKnown RBP12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 OR51B5Q9H339 312 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 ACTR8Q9H981 624 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 ROPN1Q9HAT0 212 aaPredicted RBP12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 CLK4Q9HAZ1 481 aaKnown RBP12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 TMEM216Q9P0N5 145 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 COPG2Q9UBF2 871 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 ERRFI1Q9UJM3 462 aaPredicted RBP12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 FBXW2Q9UKT8 454 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 TMCO1Q9UM00 188 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 DOPEY1Q5JWR5 2465 aa12.76□□□□□ -0.37
VPS9D1-204ENST00000565023 UTP20O75691 2785 aaKnown RBP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 TRBV11-1A0A0K0K1C0 115 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 FOXO6A8MYZ6 492 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 TGFBR3LH3BV60 316 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 GOLGA8RI6L899 631 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 CLDN4O14493 209 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 IFNA16P05015 189 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 GSTA1P08263 222 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 SBK3P0C264 359 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 KRT15P19012 456 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 HPDP32754 393 aaPredicted RBP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 CD96P40200 585 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 SSR2P43308 183 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 PIK3CGP48736 1102 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 RAP1GDS1P52306 607 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 LIM2P55344 173 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 KCNK10P57789 538 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 PCDH1Q08174 1060 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 IFFO1Q0D2I5 559 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 E2F2Q14209 437 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 PCBP2Q15366 365 aaKnown RBP eCLIP12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 OR1C1Q15619 314 aa12.75□□□□□ -0.37
VPS9D1-204ENST00000565023 TBCCQ15814 346 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms