RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 TRBV11-1A0A0K0K1C0 115 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 K7EPI3 171 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 CTNSO60931 367 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 SLC25A12O75746 678 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 URI1O94763 535 aaPredicted RBP9.6□□□□□ -0.87
CLK3-205ENST00000561673 C2P06681 752 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 MTHFD2P13995 350 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 TRHRP34981 398 aaPredicted RBP9.6□□□□□ -0.87
CLK3-205ENST00000561673 MSH2P43246 934 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 HLCSP50747 726 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 CLCN2P51788 898 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 GPR143P51810 404 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 IRF9Q00978 393 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 ALDH6A1Q02252 535 aaKnown RBP9.6□□□□□ -0.87
CLK3-205ENST00000561673 CKAP4Q07065 602 aaKnown RBP9.6□□□□□ -0.87
CLK3-205ENST00000561673 PCDH1Q08174 1060 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 TGM3Q08188 693 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 BMPR2Q13873 1038 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 TERF2Q15554 542 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 KRTCAP3Q53RY4 240 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 UBAP2Q5T6F2 1119 aaKnown RBP9.6□□□□□ -0.87
CLK3-205ENST00000561673 C8orf74Q6P047 294 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 ZNF793Q6ZN11 406 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 CLNKQ7Z7G1 428 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 SIAH3Q8IW03 269 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 ZNF595Q8IYB9 648 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 LAS2Q8IYD9 372 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 TMEM178AQ8NBL3 297 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 ADAMTS18Q8TE60 1221 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 ZNF473Q8WTR7 871 aaKnown RBP9.6□□□□□ -0.87
CLK3-205ENST00000561673 UBTD2Q8WUN7 234 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 KCTD4Q8WVF5 259 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 NCLNQ969V3 563 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 C16orf45Q96MC5 204 aaPredicted RBP9.6□□□□□ -0.87
CLK3-205ENST00000561673 GPR137Q96N19 417 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 FRMD6Q96NE9 622 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 KCNC2Q96PR1 638 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 TSPAN10Q9H1Z9 355 aaPredicted RBP9.6□□□□□ -0.87
CLK3-205ENST00000561673 COPS7BQ9H9Q2 264 aaPredicted RBP9.6□□□□□ -0.87
CLK3-205ENST00000561673 OPTCQ9UBM4 332 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 ZNF223Q9UK11 482 aaPredicted RBP9.6□□□□□ -0.87
CLK3-205ENST00000561673 PPIEQ9UNP9 301 aaKnown RBP9.6□□□□□ -0.87
CLK3-205ENST00000561673 NOTCH2Q04721 2471 aa9.6□□□□□ -0.87
CLK3-205ENST00000561673 A0A087X1B8 175 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 MYOCOSA0A1B0GUC4 107 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 SYCE1LA8MT33 242 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 NPIPA5E9PKD4 350 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 SAP18O00422 153 aaKnown RBP9.59□□□□□ -0.87
CLK3-205ENST00000561673 RTCAO00442 366 aaKnown RBP9.59□□□□□ -0.87
CLK3-205ENST00000561673 CCL21O00585 134 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 FCHO1O14526 889 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 PRKNO60260 465 aaPredicted RBP9.59□□□□□ -0.87
CLK3-205ENST00000561673 NME2P1O60361 137 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 SLC19A2O60779 497 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 SH3BGRLO75368 114 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 TGFB1P01137 390 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 IFNA16P05015 189 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 PCNAP12004 261 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 EPB42P16452 691 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 NME2P22392 152 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 ATP5A1P25705 553 aaKnown RBP9.59□□□□□ -0.87
CLK3-205ENST00000561673 CA7P43166 264 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 RBPJQ06330 500 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 RCN2Q14257 317 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 ACAP2Q15057 778 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 UAP1Q16222 522 aaPredicted RBP9.59□□□□□ -0.87
CLK3-205ENST00000561673 PFKFB4Q16877 469 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 FAM83EQ2M2I3 478 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.59□□□□□ -0.87
CLK3-205ENST00000561673 TMEM35AQ53FP2 167 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 RNFT1Q5M7Z0 435 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 MED27Q6P2C8 311 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 CCDC91Q7Z6B0 441 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 RNF175Q8N4F7 328 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 TEX9Q8N6V9 391 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 ACOT4Q8N9L9 421 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 SRFBP1Q8NEF9 429 aaKnown RBP9.59□□□□□ -0.87
CLK3-205ENST00000561673 OR7G3Q8NG95 312 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 RHEBL1Q8TAI7 183 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 PTPMT1Q8WUK0 201 aaPredicted RBP9.59□□□□□ -0.87
CLK3-205ENST00000561673 UBE2E3Q969T4 207 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 VMP1Q96GC9 406 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 GPR78Q96P69 363 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 MAPKAP1Q9BPZ7 522 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 TBCDQ9BTW9 1192 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 MS4A8Q9BY19 250 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 ALOXE3Q9BYJ1 711 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 LYRM4Q9HD34 91 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 ADAP2Q9NPF8 381 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 SNX15Q9NRS6 342 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 NINJ2Q9NZG7 142 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 VTI1BQ9UEU0 232 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 SH3BGRL2Q9UJC5 107 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 FBXW2Q9UKT8 454 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 NPIPA1Q9UND3 350 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 MRPS33Q9Y291 106 aaKnown RBP9.59□□□□□ -0.87
CLK3-205ENST00000561673 ZNF835Q9Y2P0 537 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 SVILO95425 2214 aa9.59□□□□□ -0.87
CLK3-205ENST00000561673 CROCCQ5TZA2 2017 aa9.58□□□□□ -0.88
CLK3-205ENST00000561673 A0A096LPK6 155 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms