RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 FASTKQ14296 549 aaKnown RBP2.8□□□□□ -1.96
VPS13C-207ENST00000558919 ECSCRQ19T08 205 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 ZNF506Q5JVG8 444 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 ZNF776Q68DI1 518 aaPredicted RBP2.8□□□□□ -1.96
VPS13C-207ENST00000558919 TBC1D10CQ8IV04 446 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 RNF149Q8NC42 400 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 OR4Q3Q8NH05 313 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 CKAP2Q8WWK9 683 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 LIPHQ8WWY8 451 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 FAM162AQ96A26 154 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 BPIFA2Q96DR5 249 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 ANKRD27Q96NW4 1050 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 PLEKHA3Q9HB20 300 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 NMUR1Q9HB89 426 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 SLCO1C1Q9NYB5 712 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 NIP7Q9Y221 180 aaKnown RBP eCLIP2.8□□□□□ -1.96
VPS13C-207ENST00000558919 ZNF318Q5VUA4 2279 aa2.8□□□□□ -1.96
VPS13C-207ENST00000558919 TRAV34A0A0B4J273 112 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 YDJCA8MPS7 323 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 SCG2P13521 617 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 ANPEPP15144 967 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 CASTP20810 708 aaKnown RBP2.79□□□□□ -1.96
VPS13C-207ENST00000558919 SPRP35270 261 aaPredicted RBP2.79□□□□□ -1.96
VPS13C-207ENST00000558919 SLC1A6P48664 564 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 FOLH1Q04609 750 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 TMEM44Q2T9K0 475 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 OLFML2AQ68BL7 652 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 CASC4Q6P4E1 433 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 PET117Q6UWS5 81 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 NLRP14Q86W24 1093 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 HIPK1Q86Z02 1210 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 TRAF3IP1Q8TDR0 691 aaPredicted RBP2.79□□□□□ -1.96
VPS13C-207ENST00000558919 SAP25Q8TEE9 199 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 PCNPQ8WW12 178 aaKnown RBP2.79□□□□□ -1.96
VPS13C-207ENST00000558919 ITLN1Q8WWA0 313 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 RUNDC3BQ96NL0 473 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 RCHY1Q96PM5 261 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 C17orf62Q9BQA9 187 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 LSG1Q9H089 658 aaKnown RBP2.79□□□□□ -1.96
VPS13C-207ENST00000558919 MTIF3Q9H2K0 278 aaKnown RBP2.79□□□□□ -1.96
VPS13C-207ENST00000558919 UBE2TQ9NPD8 197 aaPredicted RBP2.79□□□□□ -1.96
VPS13C-207ENST00000558919 GPR173Q9NS66 373 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 ITGA11Q9UKX5 1188 aa2.79□□□□□ -1.96
VPS13C-207ENST00000558919 MRPL11Q9Y3B7 192 aaKnown RBP2.79□□□□□ -1.96
VPS13C-207ENST00000558919 M0R296 226 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 TBCAO75347 108 aaKnown RBP2.78□□□□□ -1.96
VPS13C-207ENST00000558919 HCKP08631 526 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 ACKR3P25106 362 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 PPIAP62937 165 aaKnown RBP2.78□□□□□ -1.96
VPS13C-207ENST00000558919 SCN1BQ07699 218 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 ITPK1Q13572 414 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 CCL14Q16627 93 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 Q1RN00 199 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 RNF212Q495C1 297 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 VWA2Q5GFL6 755 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 ATAD3CQ5T2N8 411 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 LINC00242Q5T6M2 205 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 PM20D1Q6GTS8 502 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 CAVIN1Q6NZI2 390 aaKnown RBP2.78□□□□□ -1.96
VPS13C-207ENST00000558919 TMED8Q6PL24 325 aaPredicted RBP2.78□□□□□ -1.96
VPS13C-207ENST00000558919 MSANTD1Q6ZTZ1 278 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 NUFIP2Q7Z417 695 aaKnown RBP2.78□□□□□ -1.96
VPS13C-207ENST00000558919 SERINC5Q86VE9 423 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 ZBED8Q8IZ13 594 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 CLEC1AQ8NC01 280 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 SEPT8Q92599 483 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 CORO2AQ92828 525 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 HSD17B14Q9BPX1 270 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 APOL2Q9BQE5 337 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 S100A14Q9HCY8 104 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 SH3GLB2Q9NR46 395 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 MRPL17Q9NRX2 175 aaKnown RBP2.78□□□□□ -1.96
VPS13C-207ENST00000558919 TNFRSF19Q9NS68 423 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 MGAT4AQ9UM21 535 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 GPR132Q9UNW8 380 aa2.78□□□□□ -1.96
VPS13C-207ENST00000558919 HBS1LQ9Y450 684 aaKnown RBP2.78□□□□□ -1.96
VPS13C-207ENST00000558919 POGZQ7Z3K3 1410 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 LOC390937A0A1W2PQ73 354 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 CCDC162PA2VCL2 907 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 FRAT2O75474 233 aaPredicted RBP2.77□□□□□ -1.97
VPS13C-207ENST00000558919 THY1P04216 161 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 PEX3P56589 373 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 FKBP1BP68106 108 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 RUNX3Q13761 415 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 CYLC2Q14093 348 aaPredicted RBP2.77□□□□□ -1.97
VPS13C-207ENST00000558919 PSMD6Q15008 389 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 NHLRC3Q5JS37 347 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 NEPROQ6NW34 567 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 GLRX5Q86SX6 157 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 HSCBQ8IWL3 235 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 ZNF444Q8N0Y2 327 aaPredicted RBP2.77□□□□□ -1.97
VPS13C-207ENST00000558919 CARNMT1Q8N4J0 409 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 BEST4Q8NFU0 473 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 DEPDC1BQ8WUY9 529 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 RASL10BQ96S79 203 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 IDI2Q9BXS1 227 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 PNNQ9H307 717 aaKnown RBP2.77□□□□□ -1.97
VPS13C-207ENST00000558919 MED17Q9NVC6 651 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 MIS18AQ9NYP9 233 aa2.77□□□□□ -1.97
VPS13C-207ENST00000558919 VSIG4Q9Y279 399 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms