RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 SUPT3HO75486 399 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 CLEC3AO75596 197 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 B3GALT4O96024 378 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 LTA4HP09960 611 aaKnown RBP6.88□□□□□ -1.31
SCFD1-222ENST00000556768 TYK2P29597 1187 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 SLC6A12P48065 614 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 KCNC1P48547 511 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 HSPA7P48741 367 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 PLA2G16P53816 162 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 GPX6P59796 221 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 OLR1P78380 273 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 RHAGQ02094 409 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 SLC13A2Q13183 592 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 EFTUD2Q15029 972 aaKnown RBP eCLIP6.88□□□□□ -1.311e-6■■□□□ 14.4
SCFD1-222ENST00000556768 ZKSCAN8Q15776 578 aaPredicted RBP6.88□□□□□ -1.31
SCFD1-222ENST00000556768 TOR1AIP1Q5JTV8 583 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 MROH9Q5TGP6 573 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 MRM1Q6IN84 353 aaKnown RBP6.88□□□□□ -1.31
SCFD1-222ENST00000556768 CLEC18BQ6UXF7 455 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 QSOX2Q6ZRP7 698 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 KLHDC8AQ8IYD2 350 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 FAM98AQ8NCA5 519 aaKnown RBP6.88□□□□□ -1.31
SCFD1-222ENST00000556768 CLEC18CQ8NCF0 446 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 DNAJB8Q8NHS0 232 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 IFT81Q8WYA0 676 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 EXT2Q93063 718 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 TMEM125Q96AQ2 219 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 KCNC2Q96PR1 638 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 PSMG3-AS1Q96PY0 264 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 BARD1Q99728 777 aaKnown RBP6.88□□□□□ -1.31
SCFD1-222ENST00000556768 LRRC1Q9BTT6 524 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 CD244Q9BZW8 370 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 OPTCQ9UBM4 332 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 IKZF3Q9UKT9 509 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 NOTCH2Q04721 2471 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 SPTAN1Q13813 2472 aaKnown RBP6.88□□□□□ -1.31
SCFD1-222ENST00000556768 A0A1B0GUH1 482 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CTAGE15A4D2H0 777 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 FCHO1O14526 889 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 PRAMEF2O60811 474 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 KERAO60938 352 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 SEMA7AO75326 666 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 F10P00742 488 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 INHBAP08476 426 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CTAGE8P0CG41 777 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 GFAPP14136 432 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 TFEBP19484 476 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 EEF1DP29692 281 aaKnown RBP6.87□□□□□ -1.31
SCFD1-222ENST00000556768 SERPINB1P30740 379 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CASP6P55212 293 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 HSD17B7P56937 341 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 PHEXP78562 749 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 RBPJQ06330 500 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 ACAP2Q15057 778 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 OR4D1Q15615 310 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 TBCCQ15814 346 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.87□□□□□ -1.313e-6■□□□□ 9.1
SCFD1-222ENST00000556768 GLE1Q53GS7 698 aaKnown RBP6.87□□□□□ -1.31
SCFD1-222ENST00000556768 LGSNQ5TDP6 509 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 LRRC70Q7Z2Q7 622 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 ISCA2Q86U28 154 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CTAGE6Q86UF2 777 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 RPS19BP1Q86WX3 136 aaKnown RBP6.87□□□□□ -1.31
SCFD1-222ENST00000556768 MYLK4Q86YV6 388 aaPredicted RBP6.87□□□□□ -1.31
SCFD1-222ENST00000556768 SULF2Q8IWU5 870 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CTAGE4Q8IX94 777 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.87□□□□□ -1.31
SCFD1-222ENST00000556768 TMEM178AQ8NBL3 297 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 PDPRQ8NCN5 879 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 OR2L5Q8NG80 312 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CREB3L4Q8TEY5 395 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 TRIM44Q96DX7 344 aaPredicted RBP6.87□□□□□ -1.31
SCFD1-222ENST00000556768 DEFB126Q9BYW3 111 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 SPNS1Q9H2V7 528 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 KLHL31Q9H511 634 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 LANCL2Q9NS86 450 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 NUDT4Q9NZJ9 180 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 ADGRE2Q9UHX3 823 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 PTBP2Q9UKA9 531 aaKnown RBP6.87□□□□□ -1.31
SCFD1-222ENST00000556768 OSGIN2Q9Y236 505 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 MMACHCQ9Y4U1 282 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 PCDHGB6Q9Y5F9 930 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 TNPO3Q9Y5L0 923 aaKnown RBP6.87□□□□□ -1.31
SCFD1-222ENST00000556768 MED13Q9UHV7 2174 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 J3QW42 95 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 K7EPI3 171 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 TAPBPO15533 448 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 LRRTM2O43300 516 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 DYRK3O43781 588 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 FAM155BO75949 473 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 KRT38O76015 456 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 IFNA16P05015 189 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CELA2AP08217 269 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 SLC35E2BP0CK96 405 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 ARL1P40616 181 aaPredicted RBP6.87□□□□□ -1.31
SCFD1-222ENST00000556768 PIK3CGP48736 1102 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CYB561P49447 251 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 MTTPP55157 894 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 SLC26A5P58743 744 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 SRSF1Q07955 248 aaKnown RBP eCLIP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms