RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 KRT80Q6KB66 452 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 ANGPTL8Q6UXH0 198 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 STK32CQ86UX6 486 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 AMER3Q8N944 861 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 RDH12Q96NR8 316 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 ASPSCR1Q9BZE9 553 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 CXorf36Q9H7Y0 433 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 PRDM7Q9NQW5 492 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 ACSS1Q9NUB1 689 aaPredicted RBP25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 C2orf42Q9NWW7 574 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 TEX10Q9NXF1 929 aaPredicted RBP25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 RAPGEFL1Q9UHV5 662 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 FAM221BA6H8Z2 402 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 ERI3O43414 337 aaKnown RBP25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 TNFSF14O43557 240 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 VIPP01282 170 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 HOXB3P14651 431 aaPredicted RBP25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 MANFP55145 182 aaKnown RBP25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 GAS6Q14393 721 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 SLC9A5Q14940 896 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 PLCL1Q15111 1095 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 SLC5A12Q1EHB4 618 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 OTUD3Q5T2D3 398 aaPredicted RBP25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 ZBED6CLQ96FA7 236 aaPredicted RBP25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 SLAMF7Q9NQ25 335 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 ADPRHL2Q9NX46 363 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 ANKMY1Q9P2S6 941 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 ACSL6Q9UKU0 697 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 PADI4Q9UM07 663 aa25.03■■□□□ 1.6
CCDC88C-205ENST00000553403 KIR2DS5A0A0G2JLQ3 304 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 A0A0G2JNG1 304 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 H0YAE9 185 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 KIR2DS3K7RE56 304 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 PLOD2O00469 737 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 PPM1DO15297 605 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 ALPLP05186 524 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 SMIM18P0DKX4 95 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 HIST1H1TP22492 207 aaPredicted RBP25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 ATP5A1P25705 553 aaKnown RBP25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 TGM3Q08188 693 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 SPIDRQ14159 915 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 FZD2Q14332 565 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 KIR2DS5Q14953 304 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 ZNF630Q2M218 657 aaPredicted RBP25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 CCDC80Q76M96 950 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 RNF130Q86XS8 419 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 SLC30A8Q8IWU4 369 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 OR2A14Q96R47 310 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 ORAI3Q9BRQ5 295 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 ABCG4Q9H172 646 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 KLHL20Q9Y2M5 609 aa25.02■■□□□ 1.6
CCDC88C-205ENST00000553403 IGHV1OR15-9A0A0B4J2B8 117 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 A0A0G2JN53 185 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 OR2A25A4D2G3 310 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 LINGO3P0C6S8 592 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 UBE2IP63279 158 aaKnown RBP25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 EEF1A2Q05639 463 aaKnown RBP25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 FZD5Q13467 585 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 GPR18Q14330 331 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 CYBRD1Q53TN4 286 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 SAXO2Q658L1 398 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 PIWIL3Q7Z3Z3 882 aaKnown RBP25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 HIPK1Q86Z02 1210 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 OR5AK3PQ8NH89 298 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 NT5CQ8TCD5 201 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 MAL2Q969L2 176 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 NEURL3Q96EH8 262 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 HSH2DQ96JZ2 352 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 MRPS26Q9BYN8 205 aaKnown RBP25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 TCEAL2Q9H3H9 227 aaPredicted RBP25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 TM9SF3Q9HD45 589 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 CPNE7Q9UBL6 633 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 ASB4Q9Y574 426 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 BDP1A6H8Y1 2624 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 NOBOXO60393 691 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 FKBP9O95302 570 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 FABP3P05413 133 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 UGT2B7P16662 529 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 PRIM2P49643 509 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 ADARB1P78563 741 aaKnown RBP25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 SCARB2Q14108 478 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 NDUFAF5Q5TEU4 345 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 ACOT4Q8N9L9 421 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 OR10Q1Q8NGQ4 319 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 PSMA8Q8TAA3 256 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 CYGBQ8WWM9 190 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 EXOSC8Q96B26 276 aaKnown RBP25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 KLHDC7BQ96G42 594 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 RBM4BQ9BQ04 359 aaKnown RBP25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 RBM4Q9BWF3 364 aaKnown RBP25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 OSBPL10Q9BXB5 764 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 FAM192AQ9GZU8 254 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 CHRDQ9H2X0 955 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 CAAP1Q9H8G2 361 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 LTB4R2Q9NPC1 389 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 ACTR10Q9NZ32 417 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 APOBEC3BQ9UH17 382 aaKnown RBP25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 MAP4K5Q9Y4K4 846 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 ENTPD2Q9Y5L3 495 aa25.01■■□□□ 1.59
CCDC88C-205ENST00000553403 C4orf51C9J302 202 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms