RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SLC36A3Q495N2 470 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SOWAHCQ53LP3 525 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CYBRD1Q53TN4 286 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CLEC12AQ5QGZ9 265 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 C9orf50Q5SZB4 431 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ARTNQ5T4W7 220 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CPTPQ5TA50 214 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 LCN1P1Q5VSP4 162 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 HMBOX1Q6NT76 420 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TBPL2Q6SJ96 375 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 DPY19L3Q6ZPD9 716 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 USP45Q70EL2 814 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CILP2Q8IUL8 1156 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 PEX5LQ8IYB4 626 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 FAM9CQ8IZT9 166 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TMEM199Q8N511 208 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SLC37A3Q8NCC5 494 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 FAM83FQ8NEG4 500 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 OR10G2Q8NGC3 310 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TANKQ92844 425 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SLCO4A1Q96BD0 722 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CDKN2AIPNLQ96HQ2 116 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ZNF641Q96N77 438 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TSPAN18Q96SJ8 248 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TTPALQ9BTX7 342 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ZNF385DQ9H6B1 395 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ATP13A3Q9H7F0 1226 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 NANSQ9NR45 359 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 POLR3BQ9NW08 1133 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 GPR83Q9NYM4 423 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 AGO1Q9UL18 857 aaKnown RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CLCA2Q9UQC9 943 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TRAV19A0A0A6YYK7 116 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SLC28A1O00337 649 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 KIAA0513O60268 411 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ARHGEF15O94989 841 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CH25HO95992 272 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 RLN1P04808 185 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 FGF1P05230 155 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ALDOCP09972 364 aaKnown RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 HOXB8P17481 243 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 MYL9P24844 172 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ADMP35318 185 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ACVRL1P37023 503 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ALDH3B2P48448 385 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SLC9A3P48764 834 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CDC42EP1Q00587 391 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 APOFQ13790 326 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ATP13A5Q4VNC0 1218 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SIRPB2Q5JXA9 342 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 C1QTNF12Q5T7M4 302 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 LIPKQ5VXJ0 399 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TNFAIP8L2Q6P589 184 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CXCL17Q6UXB2 119 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 MACC1Q6ZN28 852 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SYVN1Q86TM6 617 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 LGI4Q8N135 537 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ARMC10Q8N2F6 343 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 C10orf53Q8N6V4 93 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ZNF433Q8N7K0 673 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ZFP41Q8N8Y5 198 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 OR4A15Q8NGL6 344 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 DPF3Q92784 378 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SNAPC3Q92966 411 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TMEM159Q96B96 161 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 FCRL5Q96RD9 977 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 NEURL2Q9BR09 285 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 KIFC1Q9BW19 673 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SLC22A4Q9H015 551 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 MMP27Q9H306 513 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 IL23AQ9NPF7 189 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 AGPAT4Q9NRZ5 378 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TMEM181Q9P2C4 612 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 NLKQ9UBE8 527 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 RIMKLBQ9ULI2 386 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CFL2Q9Y281 166 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 A0A1B0GVC2 190 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 TCRBV3S1A0A5B6 114 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 A6NIN4 97 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 MAGEB17A8MXT2 336 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 LOC730098B7Z3J9 87 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 C5orf67F2Z3F1 127 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 PLK4O00444 970 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 MTX2O75431 263 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ALDH1A2O94788 518 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 PIGRP01833 764 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 SMIM10L2AP0DMW4 78 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 SMIM10L2BP0DMW5 78 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 NR2F1P10589 423 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 GSTM2P28161 218 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CD40LGP29965 261 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 MAN2A2P49641 1150 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ZXDBP98169 803 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 NAE1Q13564 534 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 VEPH1Q14D04 833 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 OR4D1Q15615 310 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 SMAD2Q15796 467 aaKnown RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 IDNKQ5T6J7 187 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CYHR1Q6ZMK1 362 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ISCA2Q86U28 154 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms