RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SLC6A5Q9Y345 797 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 MRPL11Q9Y3B7 192 aaKnown RBP2.29□□□□□ -2.04
VPS50-216ENST00000484954 FBXO7Q9Y3I1 522 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 MUC19Q7Z5P9 8384 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 ANXA2P2A6NMY6 339 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 PIGRP01833 764 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 CCDC175P0C221 793 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 ADRA2CP18825 462 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 FASP25445 335 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 RPL9P32969 192 aaKnown RBP2.28□□□□□ -2.04
VPS50-216ENST00000484954 SPRP35270 261 aaPredicted RBP2.28□□□□□ -2.04
VPS50-216ENST00000484954 SLC1A3P43003 542 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 RAD23AP54725 363 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 PPIAP62937 165 aaKnown RBP2.28□□□□□ -2.04
VPS50-216ENST00000484954 PPA1Q15181 289 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 TCP11X2Q5H9J9 407 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 MARC1Q5VT66 337 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 DMKNQ6E0U4 476 aaPredicted RBP2.28□□□□□ -2.04
VPS50-216ENST00000484954 ARMCX5Q6P1M9 558 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 ERN2Q76MJ5 926 aaKnown RBP2.28□□□□□ -2.04
VPS50-216ENST00000484954 CREBRFQ8IUR6 639 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 CCDC71Q8IV32 467 aaPredicted RBP2.28□□□□□ -2.04
VPS50-216ENST00000484954 SMYD1Q8NB12 490 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 KIF18AQ8NI77 898 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 GPR148Q8TDV2 347 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 BPIFA2Q96DR5 249 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 B3GALT6Q96L58 329 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 MCCC1Q96RQ3 725 aaPredicted RBP2.28□□□□□ -2.04
VPS50-216ENST00000484954 PRMT1Q99873 361 aaKnown RBP2.28□□□□□ -2.04
VPS50-216ENST00000484954 MGME1Q9BQP7 344 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 RABEP2Q9H5N1 569 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 IL17CQ9P0M4 197 aa2.28□□□□□ -2.04
VPS50-216ENST00000484954 A0A087WV48 116 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 FOXI3A8MTJ6 420 aaPredicted RBP2.27□□□□□ -2.05
VPS50-216ENST00000484954 TSC22D2O75157 780 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 FGF19O95750 216 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 GBAP04062 536 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 FAM58BPP0C7Q3 252 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 PTAFRP25105 342 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 EEF1DP29692 281 aaKnown RBP2.27□□□□□ -2.05
VPS50-216ENST00000484954 TIA1P31483 386 aaKnown RBP eCLIP2.27□□□□□ -2.05
VPS50-216ENST00000484954 KRT20P35900 424 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 HMGCLP35914 325 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 PRKCIP41743 596 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 CAPRIN1Q14444 709 aaKnown RBP2.27□□□□□ -2.05
VPS50-216ENST00000484954 RALBP1Q15311 655 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 RFTN2Q52LD8 501 aaPredicted RBP2.27□□□□□ -2.05
VPS50-216ENST00000484954 VWA2Q5GFL6 755 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 C1orf141Q5JVX7 400 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 PLPP4Q5VZY2 271 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 FAM91A1Q658Y4 838 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 CGB2Q6NT52 195 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 RFPL4BQ6ZWI9 263 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 KRT74Q7RTS7 529 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 ADCK2Q7Z695 626 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 MEX3DQ86XN8 651 aaKnown RBP2.27□□□□□ -2.05
VPS50-216ENST00000484954 TBC1D10CQ8IV04 446 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 ZNF781Q8N8C0 355 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 CCDC191Q8NCU4 936 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 OR13C5Q8NGS8 318 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 OR6F1Q8NGZ6 308 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 PCNPQ8WW12 178 aaKnown RBP2.27□□□□□ -2.05
VPS50-216ENST00000484954 EXOC4Q96A65 974 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 NACAP1Q9BZK3 213 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 MTIF3Q9H2K0 278 aaKnown RBP2.27□□□□□ -2.05
VPS50-216ENST00000484954 NKIRAS2Q9NYR9 191 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 ITGA11Q9UKX5 1188 aa2.27□□□□□ -2.05
VPS50-216ENST00000484954 HBS1LQ9Y450 684 aaKnown RBP2.27□□□□□ -2.05
VPS50-216ENST00000484954 COL4A4P53420 1690 aaPredicted RBP2.26□□□□□ -2.05
VPS50-216ENST00000484954 IGKV6D-21A0A0A0MT36 114 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 A0A0B4J203 849 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 KLF18A0A0U1RQI7 1052 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 OR5H15A6NDH6 313 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 C5orf52A6NGY3 159 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 E2F3O00716 465 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 CDX4O14627 284 aaPredicted RBP2.26□□□□□ -2.05
VPS50-216ENST00000484954 LRRTM2O43300 516 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 SELENOFO60613 162 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 PRB2P02812 416 aaPredicted RBP2.26□□□□□ -2.05
VPS50-216ENST00000484954 LDHCP07864 332 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 OR9G9P0C7N8 305 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 SUPT20HL2P0C7V6 817 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 GJB2P29033 226 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 ID1P41134 155 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 SLC1A6P48664 564 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 NAGLUP54802 743 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 RPP38P78345 283 aaKnown RBP2.26□□□□□ -2.05
VPS50-216ENST00000484954 NAAAQ02083 359 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 ABRQ12979 859 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 GPR50Q13585 617 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 FASTKQ14296 549 aaKnown RBP2.26□□□□□ -2.05
VPS50-216ENST00000484954 C17orf58Q2M2W7 97 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 ARMCX4Q5H9R4 360 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 ZNF491Q8N8L2 437 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 ESAMQ96AP7 390 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 NTNG2Q96CW9 530 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 PPP1R16AQ96I34 528 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 ANKRD27Q96NW4 1050 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 INTS14Q96SY0 518 aa2.26□□□□□ -2.05
VPS50-216ENST00000484954 DEFB126Q9BYW3 111 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms