RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 FAM46DQ8NEK8 389 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 C9orf43Q8TAL5 461 aaPredicted RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 TMCO6Q96DC7 493 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 TMEM175Q9BSA9 504 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 ZCCHC2Q9C0B9 1178 aaKnown RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 MMP28Q9H239 520 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 CWH43Q9H720 699 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 A0A0G2JMZ2 1700 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 LRRC37A2A6NM11 1700 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 TGM1P22735 817 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 IL12RB1P42701 662 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 B4GALNT1Q00973 533 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 HNRNPA0Q13151 305 aaKnown RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 NUMA1Q14980 2115 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 SPHARQ15513 63 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 TBCEQ15813 527 aaPredicted RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 TRIM71Q2Q1W2 868 aaKnown RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 FNDC3BQ53EP0 1204 aaKnown RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 SLC46A3Q7Z3Q1 461 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 C17orf64Q86WR6 236 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 CBARPQ8N350 705 aaPredicted RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 L3MBTL4Q8NA19 623 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 UBTD2Q8WUN7 234 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 ZNF607Q96SK3 696 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 SMURF1Q9HCE7 757 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 GSTK1Q9Y2Q3 226 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 WNT6Q9Y6F9 365 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 GAPDHSO14556 408 aaPredicted RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 PCDH8O95206 1070 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 H1F0P07305 194 aaKnown RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 CD72P21854 359 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 HLA-FP30511 346 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 VIPR1P32241 457 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 NKX3-2P78367 333 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 SP140Q13342 867 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 ARHGAP15Q53QZ3 475 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 C22orf42Q6IC83 251 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 SHFQ7M4L6 423 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 MAPKAP1Q9BPZ7 522 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 RETREG1Q9H6L5 497 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 ZDHHC4Q9NPG8 344 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 FBXO8Q9NRD0 319 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 PRAMEF33A0A0G2JMD5 474 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 QSOX1O00391 747 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 PRAMEF10O60809 474 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 PSIP1O75475 530 aaKnown RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 IGFBP1P08833 259 aaPredicted RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 IDSP22304 550 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 PTX3P26022 381 aaPredicted RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 PCGF2P35227 344 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 MLLT1Q03111 559 aaPredicted RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 HEPACAMQ14CZ8 416 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 ZNF630Q2M218 657 aaPredicted RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 RNASE12Q5GAN4 147 aaKnown RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 CRB2Q5IJ48 1285 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 LY6G5CQ5SRR4 150 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 NRARPQ7Z6K4 114 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.36□□□□□ -0.59
MSH6-204ENST00000445503 KAT2AQ92830 837 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 ZNF486Q96H40 463 aaPredicted RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 DEFB118Q96PH6 123 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 TEFMQ96QE5 360 aaKnown RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 TSSK6Q9BXA6 273 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 ANKHQ9HCJ1 492 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 CLEC4AQ9UMR7 237 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 MRPS7Q9Y2R9 242 aaKnown RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 NYNRINQ9P2P1 1898 aaKnown RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 SLC35F4A4IF30 521 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 HAT1O14929 419 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 TYRP14679 529 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 TNFSF8P32971 234 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 SSR2P43308 183 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 KCNJ10P78508 379 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 IL18Q14116 193 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 REEP3Q6NUK4 255 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 TUBA3EQ6PEY2 450 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 GALNT12Q8IXK2 581 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 MMP21Q8N119 569 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 GPR151Q8TDV0 419 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 LINC00597Q9H2U6 94 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 MOV10Q9HCE1 1003 aaKnown RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 TMEM98Q9Y2Y6 226 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 FAM240BA0A1B0GVZ2 78 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 YY2O15391 372 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 TEX28O15482 410 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 OR1F1O43749 312 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 MPZL2O60487 215 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 PLOD3O60568 738 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 POP7O75817 140 aaKnown RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 GASTP01350 101 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 SOD2P04179 222 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 CSNK1DP48730 415 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 FAM26DQ5JW98 314 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 TMIGD1Q6UXZ0 262 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 OLIG3Q7RTU3 272 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 ZNF367Q7RTV3 350 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 DENND6BQ8NEG7 585 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 C16orf78Q8WTQ4 265 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 F2RL3Q96RI0 385 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 EFCAB11Q9BUY7 163 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms