RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 AP1S2P56377 157 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 WNT3P56703 355 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 RAB38P57729 211 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 BMPR2Q13873 1038 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 SLBPQ14493 270 aaKnown RBP eCLIP7.51□□□□□ -1.21
VIM-202ENST00000421459 CYP1B1Q16678 543 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 SPANXN3Q5MJ09 141 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 SLCO4C1Q6ZQN7 724 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 CNTN4Q8IWV2 1026 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 KLHDC8AQ8IYD2 350 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 ZZZ3Q8IYH5 903 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 EID3Q8N140 333 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 TBC1D19Q8N5T2 526 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 ARMC2Q8NEN0 867 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 TRIM58Q8NG06 486 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 ATL1Q8WXF7 558 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 ASB15Q8WXK1 588 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 ESAMQ96AP7 390 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 CERS2Q96G23 380 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 FAR2Q96K12 515 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 SMC6Q96SB8 1091 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 EGFL8Q99944 293 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 CCDC77Q9BR77 488 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 GPATCH1Q9BRR8 931 aaKnown RBP7.51□□□□□ -1.21
VIM-202ENST00000421459 TRIM54Q9BYV2 358 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 ZDHHC11Q9H8X9 412 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 GRPEL1Q9HAV7 217 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 ZNF358Q9NW07 568 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 DNAJB12Q9NXW2 375 aaKnown RBP7.51□□□□□ -1.21
VIM-202ENST00000421459 TUBA8Q9NY65 449 aaPredicted RBP7.51□□□□□ -1.21
VIM-202ENST00000421459 MYOTQ9UBF9 498 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 CHMP2BQ9UQN3 213 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 PCNX1Q96RV3 2341 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 URADA6NGE7 173 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 HRKO00198 91 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 RTCAO00442 366 aaKnown RBP7.5□□□□□ -1.21
VIM-202ENST00000421459 CDK2AP1O14519 115 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 DNALI1O14645 258 aaPredicted RBP7.5□□□□□ -1.21
VIM-202ENST00000421459 TAPBPO15533 448 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 LDB3O75112 727 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ZWINTO95229 277 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 LRATO95237 230 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ETHE1O95571 254 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ENO2P09104 434 aaPredicted RBP7.5□□□□□ -1.21
VIM-202ENST00000421459 RFPL3SP0C7P2 107 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ENDOUP21128 410 aaKnown RBP7.5□□□□□ -1.21
VIM-202ENST00000421459 CNR1P21554 472 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ACVR2AP27037 513 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 GMPRP36959 345 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ELK3P41970 407 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 LIM2P55344 173 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 SKP1P63208 163 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 FOXO1Q12778 655 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 TSNQ15631 228 aaKnown RBP7.5□□□□□ -1.21
VIM-202ENST00000421459 CEBPEQ15744 281 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 CES4AQ5XG92 561 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 FAM45BPQ6NSW5 357 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 NIPAL1Q6NVV3 410 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 TMIGD1Q6UXZ0 262 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 HSDL2Q6YN16 418 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 DGAT2L6Q6ZPD8 337 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ZNF662Q6ZS27 426 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ACAD11Q709F0 780 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 TRILQ7L0X0 811 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 UBE3DQ7Z6J8 389 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ANKMY2Q8IV38 441 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 OR4N5Q8IXE1 308 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 MMP21Q8N119 569 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 FAM45AQ8TCE6 357 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 GAL3ST3Q96A11 431 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 PPWD1Q96BP3 646 aaKnown RBP7.5□□□□□ -1.21
VIM-202ENST00000421459 CAPZA3Q96KX2 299 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 F2RL3Q96RI0 385 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 MAPKAP1Q9BPZ7 522 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ALOXE3Q9BYJ1 711 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 OR8D2Q9GZM6 311 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 CLK4Q9HAZ1 481 aaKnown RBP7.5□□□□□ -1.21
VIM-202ENST00000421459 SPRR3Q9UBC9 169 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 KCNN3Q9UGI6 736 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ACAD8Q9UKU7 415 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 ZNF490Q9ULM2 529 aaPredicted RBP7.5□□□□□ -1.21
VIM-202ENST00000421459 PPIEQ9UNP9 301 aaKnown RBP7.5□□□□□ -1.21
VIM-202ENST00000421459 PPP2R2CQ9Y2T4 447 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 L3MBTL1Q9Y468 752 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 MMACHCQ9Y4U1 282 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 KCNE2Q9Y6J6 123 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 CLCA3PQ9Y6N3 262 aa7.5□□□□□ -1.21
VIM-202ENST00000421459 WASHC1A8K0Z3 465 aa7.49□□□□□ -1.21
VIM-202ENST00000421459 FOXO6A8MYZ6 492 aa7.49□□□□□ -1.21
VIM-202ENST00000421459 C17orf105B2RV13 164 aa7.49□□□□□ -1.21
VIM-202ENST00000421459 SAP18O00422 153 aaKnown RBP7.49□□□□□ -1.21
VIM-202ENST00000421459 CLDN4O14493 209 aa7.49□□□□□ -1.21
VIM-202ENST00000421459 B3GALT2O43825 422 aa7.49□□□□□ -1.21
VIM-202ENST00000421459 CTNSO60931 367 aa7.49□□□□□ -1.21
VIM-202ENST00000421459 H2AFYO75367 372 aaKnown RBP7.49□□□□□ -1.21
VIM-202ENST00000421459 CTAG2O75638 210 aa7.49□□□□□ -1.21
VIM-202ENST00000421459 TTC4O95801 387 aa7.49□□□□□ -1.21
VIM-202ENST00000421459 IGHG3P01860 377 aa7.49□□□□□ -1.21
VIM-202ENST00000421459 ZNF37AP17032 561 aaPredicted RBP7.49□□□□□ -1.21
VIM-202ENST00000421459 TNNI3P19429 210 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms