RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TNFAIP8L3Q5GJ75 292 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 FRMD7Q6ZUT3 714 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 ZNF595Q8IYB9 648 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 CDYL2Q8N8U2 506 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 TCP10LQ8TDR4 215 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 AGAP11Q8TF27 550 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 SELENOMQ8WWX9 145 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 ZNF717Q9BY31 904 aaPredicted RBP20.42■□□□□ 0.86
CLN3-207ENST00000395653 BRF2Q9HAW0 419 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 KCMF1Q9P0J7 381 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 SLC17A7Q9P2U7 560 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 SPACA6W5XKT8 324 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 IGKV3D-11A0A0A0MRZ8 115 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 K7EM74 188 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 CYR61O00622 381 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 KRT6AP02538 564 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 PDGFAP04085 211 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 KRT6BP04259 564 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 ENO1P06733 434 aaKnown RBP20.41■□□□□ 0.86
CLN3-207ENST00000395653 CREB1P16220 341 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 KRT6CP48668 564 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 HSD17B7P56937 341 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 BTG2P78543 158 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 Q0VFX4 171 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 CFAP157Q5JU67 520 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 VWA5B1Q5TIE3 1220 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 IRAK1BP1Q5VVH5 260 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 ASB18Q6ZVZ8 466 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 C10orf107Q8IVU9 208 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 PARP9Q8IXQ6 854 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 ZNF843Q8N446 348 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 METTL6Q8TCB7 284 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 PGM2Q96G03 612 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 IMMP1LQ96LU5 166 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 SMAD5Q99717 465 aaKnown RBP20.41■□□□□ 0.86
CLN3-207ENST00000395653 SORBS1Q9BX66 1292 aaKnown RBP20.41■□□□□ 0.86
CLN3-207ENST00000395653 LHPPQ9H008 270 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 ZNF552Q9H707 407 aaPredicted RBP20.41■□□□□ 0.86
CLN3-207ENST00000395653 SSU72Q9NP77 194 aaKnown RBP20.41■□□□□ 0.86
CLN3-207ENST00000395653 ZNF451Q9Y4E5 1061 aa20.41■□□□□ 0.86
CLN3-207ENST00000395653 SPTA1P02549 2419 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 BSNQ9UPA5 3926 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 CLDN4O14493 209 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 TRIM13O60858 407 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 PDYNP01213 254 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 ICAM2P13598 275 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 NR1D1P20393 614 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 BSGP35613 385 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 AP2B1P63010 937 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 ASPHQ12797 758 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 NFATC3Q12968 1075 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 RAPSNQ13702 412 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 RIPOR1Q6ZS17 1223 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 EXOC3L1Q86VI1 746 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 NUDT13Q86X67 352 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 HPS6Q86YV9 775 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 SCUBE1Q8IWY4 988 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 KBTBD2Q8IY47 623 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 FAM47BQ8NA70 645 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 CSF3RQ99062 836 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 MAPKAP1Q9BPZ7 522 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 WDR77Q9BQA1 342 aaPredicted RBP20.4■□□□□ 0.86
CLN3-207ENST00000395653 DDX31Q9H8H2 851 aaKnown RBP20.4■□□□□ 0.86
CLN3-207ENST00000395653 MID1IP1Q9NPA3 183 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 PRTFDC1Q9NRG1 225 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 FARSBQ9NSD9 589 aaKnown RBP20.4■□□□□ 0.86
CLN3-207ENST00000395653 MS4A12Q9NXJ0 267 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 C5AR2Q9P296 337 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 COL6A6A6NMZ7 2263 aa20.4■□□□□ 0.86
CLN3-207ENST00000395653 IGHV3-20A0A0C4DH32 117 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 TCRBV16S1A1N1A0A5B0 115 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 BLACEA4D250 179 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 SYNDIG1LA6NDD5 238 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 MANBAO00462 879 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 UBFD1O14562 309 aaKnown RBP20.39■□□□□ 0.85
CLN3-207ENST00000395653 SEC24DO94855 1032 aaPredicted RBP20.39■□□□□ 0.85
CLN3-207ENST00000395653 ALPPP05187 535 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 SERPINA7P05543 415 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 HSD3B1P14060 373 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 MAOAP21397 527 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 HSD3B2P26439 372 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 HMOX2P30519 316 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 HNRNPFP52597 415 aaKnown RBP20.39■□□□□ 0.85
CLN3-207ENST00000395653 ZNF33BQ06732 778 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 SLAMF1Q13291 335 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 SFT2D3Q587I9 215 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 SGO1Q5FBB7 561 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 TMEM52Q8NDY8 209 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 THOC3Q96J01 351 aaKnown RBP20.39■□□□□ 0.85
CLN3-207ENST00000395653 LPAR4Q99677 370 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 CENPHQ9H3R5 247 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 NMRK1Q9NWW6 199 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 AHSPQ9NZD4 102 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 PHF11Q9UIL8 331 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 ACTL7BQ9Y614 415 aa20.39■□□□□ 0.85
CLN3-207ENST00000395653 A0A0A6YYD5 115 aa20.38■□□□□ 0.85
CLN3-207ENST00000395653 CTIFO43310 598 aaKnown RBP20.38■□□□□ 0.85
CLN3-207ENST00000395653 ULK1O75385 1050 aa20.38■□□□□ 0.85
CLN3-207ENST00000395653 MYZAPP0CAP1 466 aa20.38■□□□□ 0.85
CLN3-207ENST00000395653 PRR35P0CG20 571 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms