RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 ACOT9Q9Y305 439 aa12.76□□□□□ -0.37
TNFRSF1A-202ENST00000366159 TSC22D4Q9Y3Q8 395 aa12.76□□□□□ -0.37
TNFRSF1A-202ENST00000366159 CLDN4O14493 209 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 CTNSO60931 367 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 MYO1DO94832 1006 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ALDOAP04075 364 aaKnown RBP12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 S100BP04271 92 aaPredicted RBP12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 CERS1P27544 350 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 CA7P43166 264 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 CYB561P49447 251 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 HLCSP50747 726 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 CLCN2P51788 898 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 IRF9Q00978 393 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 CKAP4Q07065 602 aaKnown RBP12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 HIST2H2ACQ16777 129 aaPredicted RBP12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 KRTCAP3Q53RY4 240 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 RNFT1Q5M7Z0 435 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 MROH9Q5TGP6 573 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 HIST2H2AA3Q6FI13 130 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 C8orf74Q6P047 294 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 Q6ZPB1 254 aaPredicted RBP12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 MMGT1Q8N4V1 131 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 FAM47BQ8NA70 645 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 OR7G3Q8NG95 312 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 KCTD4Q8WVF5 259 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 GPR137Q96N19 417 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 KCNC2Q96PR1 638 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 TBCDQ9BTW9 1192 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 DEFB126Q9BYW3 111 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 LYRM4Q9HD34 91 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 VTI1BQ9UEU0 232 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 CSMD1Q96PZ7 3565 aa12.75□□□□□ -0.37
TNFRSF1A-202ENST00000366159 A0A087X1B8 175 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SYNDIG1LA6NDD5 238 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 PRKNO60260 465 aaPredicted RBP12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SLC25A12O75746 678 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 KLHL2O95198 593 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ATP5A1P25705 553 aaKnown RBP12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 MSH2P43246 934 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 OC90Q02509 493 aaPredicted RBP12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 BMPR2Q13873 1038 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 NAA30Q147X3 362 aaPredicted RBP12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SETDB1Q15047 1291 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ACAP2Q15057 778 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 TMEM35AQ53FP2 167 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 DEPDC1Q5TB30 811 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 GRHL2Q6ISB3 625 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 MED27Q6P2C8 311 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ACOT4Q8N9L9 421 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SRFBP1Q8NEF9 429 aaKnown RBP12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 PTPMT1Q8WUK0 201 aaPredicted RBP12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ITLN2Q8WWU7 325 aaPredicted RBP12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 EXT2Q93063 718 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 UBE2E3Q969T4 207 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 NCLNQ969V3 563 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ISL2Q96A47 359 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 VMP1Q96GC9 406 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 MAPKAP1Q9BPZ7 522 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ROGDIQ9GZN7 287 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ACSS3Q9H6R3 686 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ADAP2Q9NPF8 381 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SNX15Q9NRS6 342 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 PNO1Q9NRX1 252 aaKnown RBP12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 NINJ2Q9NZG7 142 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 OPTCQ9UBM4 332 aa12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 DMGDHQ9UI17 866 aaKnown RBP12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 MRPS33Q9Y291 106 aaKnown RBP12.74□□□□□ -0.37
TNFRSF1A-202ENST00000366159 APCP25054 2843 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 TRBV11-1A0A0K0K1C0 115 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SYCE1LA8MT33 242 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SUPT3HB4E1H0 165 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 FCHO1O14526 889 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SLC19A2O60779 497 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SUPT3HO75486 399 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 EPB42P16452 691 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 HIST1H1TP22492 207 aaPredicted RBP12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ECHS1P30084 290 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SERPINB1P30740 379 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 MAGEA12P43365 314 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ALDH6A1Q02252 535 aaKnown RBP12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 TGM3Q08188 693 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SLC13A2Q13183 592 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 PCBP2Q15366 365 aaKnown RBP eCLIP12.73□□□□□ -0.371e-6■■■■□ 21.9
TNFRSF1A-202ENST00000366159 ELAVL1Q15717 326 aaKnown RBP12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 MAPKAPK3Q16644 382 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 WHAMMP3Q1A5X7 153 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 FAM83EQ2M2I3 478 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 CLNKQ7Z7G1 428 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 SLC34A3Q8N130 599 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ANKRD9Q96BM1 317 aaPredicted RBP12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 CCDC120Q96HB5 630 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ZNF717Q9BY31 904 aaPredicted RBP12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 MYO7BQ6PIF6 2116 aa12.73□□□□□ -0.37
TNFRSF1A-202ENST00000366159 FBN2P35556 2912 aa12.72□□□□□ -0.37
TNFRSF1A-202ENST00000366159 A0A096LPK6 155 aa12.72□□□□□ -0.37
TNFRSF1A-202ENST00000366159 TRGV8A0A0C4DH27 118 aa12.72□□□□□ -0.37
TNFRSF1A-202ENST00000366159 LRRC14BA6NHZ5 514 aa12.72□□□□□ -0.37
TNFRSF1A-202ENST00000366159 RTCAO00442 366 aaKnown RBP12.72□□□□□ -0.37
TNFRSF1A-202ENST00000366159 ASNA1O43681 348 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms