RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MRPL19P49406 292 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ERVK-16P61578 105 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF177Q13360 481 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ENPP2Q13822 863 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 PIGHQ14442 188 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF805Q5CZA5 627 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 PRRT3Q5FWE3 981 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 IL20RBQ6UXL0 311 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 CARM1Q86X55 608 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 FDCSPQ8NFU4 85 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 OR10K1Q8NGX5 313 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 HLA-CQ95604 372 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 RERGQ96A58 199 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 SPACA9Q96E40 222 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 METTL9Q9H1A3 318 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC17A6Q9P2U8 582 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 APEX2Q9UBZ4 518 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 LAMC3Q9Y6N6 1575 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 A0A1B0GTQ1 180 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TNFRSF11BO00300 401 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 UBFD1O14562 309 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 MED6O75586 246 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 MT-ND1P03886 318 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 MRPL3P09001 348 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 H2AFB2P0C5Z0 115 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 OR5G3P0C626 314 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 GAAP10253 952 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 HLA-FP30511 346 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ASPAP45381 313 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TAS2R20P59543 309 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ERVFC1P60507 584 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 RPL38P63173 70 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 EN1Q05925 392 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 CYP27C1Q4G0S4 372 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 GPR180Q86V85 440 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 NAT16Q8N8M0 369 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 OR4A4PQ8NGN8 299 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 PCNPQ8WW12 178 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 UROC1Q96N76 676 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 GAS2L1Q99501 681 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 CIB1Q99828 191 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 WRAP53Q9BUR4 548 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 SEZ6LQ9BYH1 1024 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 NXF5Q9H1B4 397 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC38A1Q9H2H9 487 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ELF5Q9UKW6 265 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TCAF1Q9Y4C2 921 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 POLR3AO14802 1390 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 CFAP74Q9C0B2 1584 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 PRAMEF11O60813 436 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 SGPL1O95470 568 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 PLAUP00749 431 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 RENP00797 406 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 STAG3L1P0CL83 205 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 CD36P16671 472 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TBXAS1P24557 533 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 IMPA1P29218 277 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 BAG6P46379 1132 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 FLI1Q01543 452 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 SEMA5AQ13591 1074 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ZACNQ401N2 412 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ANKRD54Q6NXT1 300 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 UGT2A3Q6UWM9 527 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM107Q6UX40 140 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 KMT5CQ86Y97 462 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 SPPL2CQ8IUH8 684 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF584Q8IVC4 421 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 LARGE2Q8N3Y3 721 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 UBA3Q8TBC4 463 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM239Q8WW34 195 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 FGGYQ96C11 551 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 COQ10AQ96MF6 247 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 BIRC8Q96P09 236 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 VAMP8Q9BV40 100 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 SEC14L3Q9UDX4 400 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TFR2Q9UP52 801 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 RPL36Q9Y3U8 105 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TRAF6Q9Y4K3 522 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 EIF2AK4Q9P2K8 1649 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 IQSEC2Q5JU85 1478 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 A0A1B0GVM2 712 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TCAF2A6NFQ2 919 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TRAPPC6AO75865 159 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TGFB1P01137 390 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TK1P04183 234 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 CTSEP14091 401 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ACPPP15309 386 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 PRLRP16471 622 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 MPGP29372 298 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 DUTP33316 252 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 COMPP49747 757 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF135P52742 658 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC7A9P82251 487 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF169Q14929 603 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ATP6V1FQ16864 119 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM44Q2T9K0 475 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 RNF212Q495C1 297 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 FIGNQ5HY92 759 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 SFRP5Q5T4F7 317 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms