RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PIK3C2BO00750 1634 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 IFT172Q9UG01 1749 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 OR1I1O60431 355 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 RAP1GAP2Q684P5 730 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PXT1Q8NFP0 134 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 LILRB1Q8NHL6 650 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 BTN2A3PQ96KV6 586 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TVP23BQ9NYZ1 205 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 POLR1DQ9Y2S0 133 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 POMT1Q9Y6A1 747 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 FAM230AA0A1W2PPH8 454 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 A0A1W2PQL4 384 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 A8MVJ9 347 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 AQP8O94778 261 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 C4BPAP04003 597 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SPI1P17947 270 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 RPS12P25398 132 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 DNASE1L1P49184 302 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 EMX1Q04741 257 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 NAE1Q13564 534 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PEX6Q13608 980 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF460Q14592 562 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PAFAH1B3Q15102 231 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 HENMT1Q5T8I9 393 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CLEC6AQ6EIG7 209 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 NRARPQ7Z6K4 114 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 OR6S1Q8NH40 331 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SMPDL3AQ92484 453 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 MTERF1Q99551 399 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SPIN2AQ99865 258 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SPIN2BQ9BPZ2 258 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 RBM38Q9H0Z9 239 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TMPRSS5Q9H3S3 457 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TMLHEQ9NVH6 421 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SDHAF2Q9NX18 166 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 FKBPLQ9UIM3 349 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 V9GYS6 101 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 MFSD11O43934 449 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 DLSTP36957 453 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CD86P42081 329 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 MTNR1BP49286 362 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 FCGRTP55899 365 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 IL10RBQ08334 325 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 RBMS2Q15434 407 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SIX1Q15475 284 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 HLFQ16534 295 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 BCL2L15Q5TBC7 163 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CEP68Q76N32 757 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 DPPA2Q7Z7J5 298 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 IQCHQ86VS3 1027 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SULF1Q8IWU6 871 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ADGRF3Q8IZF5 1079 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ARMC10Q8N2F6 343 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 KIAA1958Q8N8K9 716 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 OR10H4Q8NGA5 316 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 C1QTNF7Q9BXJ2 289 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ARHGAP39Q9C0H5 1083 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 MINDY3Q9H8M7 445 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 NIT2Q9NQR4 276 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PNO1Q9NRX1 252 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 KANSL3Q9P2N6 904 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 AXIN2Q9Y2T1 843 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SPO11Q9Y5K1 396 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TXNP10599 105 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CETPP11597 493 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF35P13682 527 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 KCNQ1P51787 676 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 NKX2-5P52952 324 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 MTPNP58546 118 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SF3B4Q15427 424 aaKnown RBP eCLIP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 HBMQ6B0K9 141 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 MSANTD2Q6P1R3 559 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TMCO2Q7Z6W1 182 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TRIB2Q92519 343 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TSSK3Q96PN8 268 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF700Q9H0M5 742 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 LYRM2Q9NU23 88 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SARDHQ9UL12 918 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CLCA3PQ9Y6N3 262 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 DIP2BQ9P265 1576 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 OR2F2O95006 317 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 HBE1P02100 147 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SLC1A3P43003 542 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 MTNR1AP48039 350 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ART1P52961 327 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TAS2R50P59544 299 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CRADDP78560 199 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 GPR50Q13585 617 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 OR2F1Q13607 317 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 UAP1L1Q3KQV9 507 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 C3orf38Q5JPI3 329 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CES5AQ6NT32 575 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 NDUFAF7Q7L592 441 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 VASH1Q7L8A9 365 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 FUNDC1Q8IVP5 155 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 B3GNT7Q8NFL0 401 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 FBXO32Q969P5 355 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 APOLD1Q96LR9 279 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 BCS1LQ9Y276 419 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms