RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 EEF1A2Q05639 463 aaKnown RBP19.51■□□□□ 0.71
CLN3-240ENST00000631023 MYBPC3Q14896 1274 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 KRT71Q3SY84 523 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 FRG2Q64ET8 278 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 ASB18Q6ZVZ8 466 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 CPEB2Q7Z5Q1 589 aaKnown RBP19.51■□□□□ 0.71
CLN3-240ENST00000631023 SRRM1Q8IYB3 904 aaKnown RBP19.51■□□□□ 0.71
CLN3-240ENST00000631023 SHISA5Q8N114 240 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 ZNF843Q8N446 348 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 MYRIPQ8NFW9 859 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 WDR20Q8TBZ3 569 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 FRG2BQ96QU4 278 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 ZNF700Q9H0M5 742 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 ZNF160Q9HCG1 818 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 RIC8BQ9NVN3 520 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 PPT2Q9UMR5 302 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 MRPS33Q9Y291 106 aaKnown RBP19.51■□□□□ 0.71
CLN3-240ENST00000631023 ZNF451Q9Y4E5 1061 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 IGHV1-45A0A0A0MS14 117 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 G3V2L1 256 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 ALPPP05187 535 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 COX6A1P12074 109 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 ICAM2P13598 275 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 CPA3P15088 417 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 TSPAN8P19075 237 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 TSFMP43897 325 aaKnown RBP19.5■□□□□ 0.71
CLN3-240ENST00000631023 NEK2P51955 445 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 RAB38P57729 211 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 RPS13P62277 151 aaKnown RBP19.5■□□□□ 0.71
CLN3-240ENST00000631023 AP2B1P63010 937 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 RHAGQ02094 409 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 CUL3Q13618 768 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 RUNX2Q13950 521 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 ABRAXAS2Q15018 415 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 QSOX2Q6ZRP7 698 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 CROCCP2Q86T23 111 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 PARP9Q8IXQ6 854 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 APOPT1Q96IL0 206 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 SMC6Q96SB8 1091 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 ZNF382Q96SR6 550 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 ELOVL6Q9H5J4 265 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 MKS1Q9NXB0 559 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 SNX6Q9UNH7 406 aa19.5■□□□□ 0.71
CLN3-240ENST00000631023 OR2W5A6NFC9 320 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 SAP18O00422 153 aaKnown RBP19.49■□□□□ 0.71
CLN3-240ENST00000631023 CLDN4O14493 209 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 ATP5A1P25705 553 aaKnown RBP19.49■□□□□ 0.71
CLN3-240ENST00000631023 CERS1P27544 350 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 SSR2P43308 183 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 ZNF844Q08AG5 666 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 OR4C11Q6IEV9 310 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 UBE3DQ7Z6J8 389 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 RNF175Q8N4F7 328 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 CCNYL1Q8N7R7 359 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 ACOT4Q8N9L9 421 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 BANPQ8N9N5 519 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 ARMC2Q8NEN0 867 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 MTFMTQ96DP5 389 aaKnown RBP19.49■□□□□ 0.71
CLN3-240ENST00000631023 PTCHD1Q96NR3 888 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 SERPINI1Q99574 410 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 MESP1Q9BRJ9 268 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 TUBB6Q9BUF5 446 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 LHPPQ9H008 270 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 LYRM4Q9HD34 91 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 PRDM9Q9NQV7 894 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 SENP1Q9P0U3 644 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 TRPS1Q9UHF7 1281 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 DAPP1Q9UN19 280 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 PLLPQ9Y342 182 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 SPACA6W5XKT8 324 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 CCDC151A5D8V7 595 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 FAM227AF5H4B4 570 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 MASP2O00187 686 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 PPP6CO00743 305 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 RGS16O15492 202 aaPredicted RBP19.49■□□□□ 0.71
CLN3-240ENST00000631023 C1QL1O75973 258 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 HIST1H1TP22492 207 aaPredicted RBP19.49■□□□□ 0.71
CLN3-240ENST00000631023 EFNA3P52797 238 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 LIM2P55344 173 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 DNAJB13P59910 316 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 ACTN3Q08043 901 aaPredicted RBP19.49■□□□□ 0.71
CLN3-240ENST00000631023 LCP2Q13094 533 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 CFAP157Q5JU67 520 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 VWA5B1Q5TIE3 1220 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 LETMD1Q6P1Q0 360 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 LANCL3Q6ZV70 420 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 GPRIN3Q6ZVF9 776 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 HPS6Q86YV9 775 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 KBTBD2Q8IY47 623 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 IQCKQ8N0W5 287 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 SMAD5Q99717 465 aaKnown RBP19.49■□□□□ 0.71
CLN3-240ENST00000631023 NUDT9Q9BW91 350 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 C5AR2Q9P296 337 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 MMACHCQ9Y4U1 282 aa19.49■□□□□ 0.71
CLN3-240ENST00000631023 CROCCQ5TZA2 2017 aa19.48■□□□□ 0.71
CLN3-240ENST00000631023 B8ZZF3 427 aa19.48■□□□□ 0.71
CLN3-240ENST00000631023 RTCAO00442 366 aaKnown RBP19.48■□□□□ 0.71
CLN3-240ENST00000631023 OR4F21O95013 312 aa19.48■□□□□ 0.71
CLN3-240ENST00000631023 PKNOX1P55347 436 aa19.48■□□□□ 0.71
CLN3-240ENST00000631023 RAPSNQ13702 412 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms