RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 TRIM54Q9BYV2 358 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 PITHD1Q9GZP4 211 aaPredicted RBP5□□□□□ -1.61
SHMT1-211ENST00000618902 SLC26A1Q9H2B4 701 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 WDR54Q9H977 334 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 MRPS30Q9NP92 439 aaKnown RBP5□□□□□ -1.61
SHMT1-211ENST00000618902 CCDC177Q9NQR7 707 aaPredicted RBP5□□□□□ -1.61
SHMT1-211ENST00000618902 PAPOLBQ9NRJ5 636 aaKnown RBP5□□□□□ -1.61
SHMT1-211ENST00000618902 STARD5Q9NSY2 213 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 SOHLH2Q9NX45 425 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 NUDT4Q9NZJ9 180 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 CD274Q9NZQ7 290 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 CPSF2Q9P2I0 782 aaKnown RBP5□□□□□ -1.61
SHMT1-211ENST00000618902 SLC7A8Q9UHI5 535 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 ANAPC2Q9UJX6 822 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 RNF112Q9ULX5 631 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 CDC14AQ9UNH5 594 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 PLCL2Q9UPR0 1127 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 POLHQ9Y253 713 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 SLC22A14Q9Y267 594 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 MRPS2Q9Y399 296 aaKnown RBP5□□□□□ -1.61
SHMT1-211ENST00000618902 PCDHGA9Q9Y5G4 932 aaKnown RBP5□□□□□ -1.61
SHMT1-211ENST00000618902 COMMD3-BMI1R4GMX3 469 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 SCN3AQ9NY46 2000 aa5□□□□□ -1.61
SHMT1-211ENST00000618902 MAST4O15021 2626 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 USP9YO00507 2555 aaPredicted RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 KCNE1BA0A087WTH5 132 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 FEZF1A0PJY2 475 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 DPPA5A6NC42 116 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 C2orf72A6NCS6 295 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 A8MT66 165 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 A8MUI8 341 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SUPT3HB4E1H0 165 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 C4orf51C9J302 202 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 G3V2L1 256 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 H0YGG7 62 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 MKRN2OSH3BPM6 223 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 MEN1O00255 615 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ZNF195O14628 629 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 TERTO14746 1132 aaKnown RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ZSCAN9O15535 394 aaPredicted RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 CNOT3O75175 753 aaKnown RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 DNAJB6O75190 326 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SUPT3HO75486 399 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 CREG1O75629 220 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 IPO13O94829 963 aaKnown RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 WDR47O94967 919 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 B3GALT4O96024 378 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 NTRK1P04629 796 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 CAPN1P07384 714 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ANXA5P08758 320 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 HIST1H2AGP0C0S8 130 aaPredicted RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 PABPC4LP0CB38 370 aaKnown RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 COX4I1P13073 169 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 HIST1H2ADP20671 130 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 IL10P22301 178 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 F8A1P23610 371 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 CMPK1P30085 196 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 GRK3P35626 688 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ALDH18A1P54886 795 aaKnown RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SOX8P57073 446 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ARF3P61204 181 aaPredicted RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 REEP5Q00765 189 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 CDC16Q13042 620 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ART3Q13508 389 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 CYLC2Q14093 348 aaPredicted RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 FAM53BQ14153 422 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 RCN2Q14257 317 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SSPNQ14714 243 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 GRM7Q14831 915 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 PFKFB4Q16877 469 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 UGT8Q16880 541 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 HKDC1Q2TB90 917 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 PRTGQ2VWP7 1150 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 THEMIS2Q5TEJ8 643 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ARHGAP40Q5TG30 622 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 FAM69BQ5VUD6 431 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 CES4AQ5XG92 561 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ZNF385CQ66K41 422 aaPredicted RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 OR52E8Q6IFG1 317 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SULT1C3Q6IMI6 304 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 CAPN13Q6MZZ7 669 aaPredicted RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 TCTN3Q6NUS6 607 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 METTL2BQ6P1Q9 378 aaKnown RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 KLC3Q6P597 504 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 NXPE4Q6UWF7 544 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ZYG11AQ6WRX3 759 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 HACD2Q6Y1H2 254 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ATG14Q6ZNE5 492 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 RIPOR1Q6ZS17 1223 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 DHDDSQ86SQ9 333 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 PDSS2Q86YH6 399 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 DSELQ8IZU8 1212 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 PGAM4Q8N0Y7 254 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 TBC1D19Q8N5T2 526 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 PTGR2Q8N8N7 351 aaPredicted RBP4.99□□□□□ -1.61
SHMT1-211ENST00000618902 ANKRD53Q8N9V6 530 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 GALNT6Q8NCL4 622 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 STAG3L4Q8TBR4 150 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 WDR60Q8WVS4 1066 aa4.99□□□□□ -1.61
SHMT1-211ENST00000618902 SLC5A11Q8WWX8 675 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms