RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 E2F3O00716 465 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 B3GALT2O43825 422 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 SH3BGRLO75368 114 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 ITGAMP11215 1152 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 TGM3Q08188 693 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 BTBD16Q32M84 506 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 SFT2D3Q587I9 215 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 PAPD4Q6PIY7 484 aaKnown RBP15.03■□□□□ -0
BRCA1-228ENST00000618469 IGFL3Q6UXB1 125 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 ISLR2Q6UXK2 745 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 QSOX2Q6ZRP7 698 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 RIPOR1Q6ZS17 1223 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 LAS2Q8IYD9 372 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 AMER2Q8N7J2 671 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 Q8NA96 180 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 OR7G3Q8NG95 312 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 CNDP1Q96KN2 507 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 F2RL3Q96RI0 385 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 WDR77Q9BQA1 342 aaPredicted RBP15.03■□□□□ -0
BRCA1-228ENST00000618469 MRPL57Q9BQC6 102 aaKnown RBP15.03■□□□□ -0
BRCA1-228ENST00000618469 IPPKQ9H8X2 491 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 ANKZF1Q9H8Y5 726 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 CLK4Q9HAZ1 481 aaKnown RBP15.03■□□□□ -0
BRCA1-228ENST00000618469 PTGFRNQ9P2B2 879 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 FETUBQ9UGM5 382 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 TBK1Q9UHD2 729 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 B3GNT3Q9Y2A9 372 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 CSAG2Q9Y5P2 127 aa15.03■□□□□ -0
BRCA1-228ENST00000618469 LRBAP50851 2863 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 TCP11X1B4DZS4 312 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 FAM227AF5H4B4 570 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 STX16-NPEPL1H3BU86 382 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 GOLGA8RI6L899 631 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 STX16O14662 325 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 POU3F2P20265 443 aaPredicted RBP15.02■□□□□ -0
BRCA1-228ENST00000618469 MAOAP21397 527 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 SERPINB1P30740 379 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 OR4D2P58180 307 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 AP2B1P63010 937 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 BTG2P78543 158 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 PCDH1Q08174 1060 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 MFAP5Q13361 173 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 CRB2Q5IJ48 1285 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 METTL2BQ6P1Q9 378 aaKnown RBP15.02■□□□□ -0
BRCA1-228ENST00000618469 ABHD17CQ6PCB6 329 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 TIFABQ6ZNK6 161 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 MAMDC2Q7Z304 686 aaPredicted RBP15.02■□□□□ -0
BRCA1-228ENST00000618469 FAM47BQ8NA70 645 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 PLPP5Q8NEB5 264 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 PPP4R1Q8TF05 950 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 IMMP1LQ96LU5 166 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 MAGEB10Q96LZ2 347 aaPredicted RBP15.02■□□□□ -0
BRCA1-228ENST00000618469 PTCHD1Q96NR3 888 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 QRFPRQ96P65 431 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 KCNC2Q96PR1 638 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 SERINC2Q96SA4 455 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 LPAR4Q99677 370 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 CCDC77Q9BR77 488 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 NPLQ9BXD5 320 aaPredicted RBP15.02■□□□□ -0
BRCA1-228ENST00000618469 DMRT3Q9NQL9 472 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 PCTPQ9UKL6 214 aa15.02■□□□□ -0
BRCA1-228ENST00000618469 SMIM23A6NLE4 172 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 A8MT66 165 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 RTCAO00442 366 aaKnown RBP15.01□□□□□ -0.01
BRCA1-228ENST00000618469 ZNF500O60304 480 aaPredicted RBP15.01□□□□□ -0.01
BRCA1-228ENST00000618469 PRMT3O60678 531 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 UGDHO60701 494 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 TGFB1P01137 390 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 SHBGP04278 402 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 ICAM2P13598 275 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 SOX11P35716 441 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 MTTPP55157 894 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 RAB38P57729 211 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 PHEXP78562 749 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 ACTN3Q08043 901 aaPredicted RBP15.01□□□□□ -0.01
BRCA1-228ENST00000618469 RUNX2Q13950 521 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 CPSF6Q16630 551 aaKnown RBP eCLIP15.01□□□□□ -0.01
BRCA1-228ENST00000618469 LIPJQ5W064 366 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 PLAG1Q6DJT9 500 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 IGFL2Q6UWQ7 119 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 RNF175Q8N4F7 328 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 OR52B6Q8NGF0 335 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 HUS1BQ8NHY5 278 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 ADAMTS18Q8TE60 1221 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.01□□□□□ -0.01
BRCA1-228ENST00000618469 PSMF1Q92530 271 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 ATP6V1E2Q96A05 226 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 REPS1Q96D71 796 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 CMTM7Q96FZ5 175 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 NSUN5Q96P11 429 aaKnown RBP15.01□□□□□ -0.01
BRCA1-228ENST00000618469 CDK15Q96Q40 435 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 CSF3RQ99062 836 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 NOL11Q9H8H0 719 aaKnown RBP15.01□□□□□ -0.01
BRCA1-228ENST00000618469 PRDM9Q9NQV7 894 aa15.01□□□□□ -0.01
BRCA1-228ENST00000618469 SAP18O00422 153 aaKnown RBP15□□□□□ -0.01
BRCA1-228ENST00000618469 OR7A17O14581 309 aa15□□□□□ -0.01
BRCA1-228ENST00000618469 RPS17P08708 135 aaKnown RBP15□□□□□ -0.01
BRCA1-228ENST00000618469 SBK3P0C264 359 aa15□□□□□ -0.01
BRCA1-228ENST00000618469 SSR2P43308 183 aa15□□□□□ -0.01
BRCA1-228ENST00000618469 SLCO1A2P46721 670 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms