RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-223	ENST00000599223	CMPK2	Q5EBM0	449 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	MDGA2	Q7Z553	956 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	CD163	Q86VB7	1156 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	SULF2	Q8IWU5	870 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	SCUBE1	Q8IWY4	988 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	TBC1D19	Q8N5T2	526 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	ANKRD49	Q8WVL7	239 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	PDLIM5	Q96HC4	596 aa	Known RBP	13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	AIF1L	Q9BQI0	150 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	NAT9	Q9BTE0	207 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	TRIM54	Q9BYV2	358 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	CORO1C	Q9ULV4	474 aa	Predicted RBP	13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	PPT2	Q9UMR5	302 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	DYRK1B	Q9Y463	629 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	TEX264	Q9Y6I9	313 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	ZFHX3	Q15911	3703 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	MTOR	P42345	2549 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223		A0A0G2JMM0	328 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223		A0A1B0GTH9	108 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223		A0A1W2PPB8	328 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223		A0A1W2PRS3	328 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	KIR3DP1	A8MWS1	328 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223		E9PLN8	166 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	PSMD12	O00232	456 aa	Predicted RBP	13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	TFEC	O14948	347 aa	Predicted RBP	13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	HS6ST1	O60243	411 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	SERPINA6	P08185	405 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	SAT1	P21673	171 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	GDF5	P43026	501 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	RUNX2	Q13950	521 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	TSN	Q15631	228 aa	Known RBP	13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	NIPAL1	Q6NVV3	410 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	SYDE1	Q6ZW31	735 aa	Predicted RBP	13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	VN1R5	Q7Z5H4	357 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	MTERF4	Q7Z6M4	381 aa	Known RBP	13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	ZC3HC1	Q86WB0	502 aa	Known RBP	13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	CEP97	Q8IW35	865 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	CYP4Z2P	Q8N1L4	340 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	RPRML	Q8N4K4	120 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	TRPV3	Q8NET8	790 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	B3GNT7	Q8NFL0	401 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	SREK1	Q8WXA9	508 aa	Known RBP	13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	SDCCAG3	Q96C92	435 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	CSF3R	Q99062	836 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	VKORC1	Q9BQB6	163 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	DEFB126	Q9BYW3	111 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	GPAM	Q9HCL2	828 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	DEPP	Q9NTK1	212 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	RAB21	Q9UL25	225 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	KLF13	Q9Y2Y9	288 aa	Predicted RBP	13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	SPG11	Q96JI7	2443 aa		13.68	□□□□□ -0.22
IRF3-223	ENST00000599223	FAM95C	A0A1B0GW59	222 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	PINLYP	A6NC86	204 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	TMEM200C	A6NKL6	621 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	FCHO1	O14526	889 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	PRRG2	O14669	202 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	CDC40	O60508	579 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	PRAMEF4	O60810	478 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	ITGA10	O75578	1167 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	PIAS1	O75925	651 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	SSTR2	P30874	369 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	SLC6A12	P48065	614 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	GPR143	P51810	404 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	TAS2R39	P59534	338 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	BTN3A2	P78410	334 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	GUCY2D	Q02846	1103 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	SLBP	Q14493	270 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	PRAMEF9	Q5VWM5	478 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	SLCO4C1	Q6ZQN7	724 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	ANKMY2	Q8IV38	441 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	FAM47B	Q8NA70	645 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	GABPB2	Q8TAK5	448 aa	Predicted RBP	13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	FAM57A	Q8TBR7	257 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	13.67	□□□□□ -0.22	7e-8	■■■■■ 60.2
IRF3-223	ENST00000599223	NCLN	Q969V3	563 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	GAL3ST3	Q96A11	431 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	TMEM125	Q96AQ2	219 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	MS4A6E	Q96DS6	147 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	QRFPR	Q96P65	431 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	TREX2	Q9BQ50	279 aa	Predicted RBP	13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	TMEM79	Q9BSE2	394 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	ENKD1	Q9H0I2	346 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	LIN28A	Q9H9Z2	209 aa	Known RBP	13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	NPDC1	Q9NQX5	325 aa	Predicted RBP	13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	PNO1	Q9NRX1	252 aa	Known RBP	13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	ITGB1BP2	Q9UKP3	347 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	PPIE	Q9UNP9	301 aa	Known RBP	13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	MMACHC	Q9Y4U1	282 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	OARD1	Q9Y530	152 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	KCNE2	Q9Y6J6	123 aa		13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	SETD2	Q9BYW2	2564 aa	Predicted RBP	13.67	□□□□□ -0.22
IRF3-223	ENST00000599223	CDK2AP1	O14519	115 aa		13.66	□□□□□ -0.22
IRF3-223	ENST00000599223	ERI3	O43414	337 aa	Known RBP	13.66	□□□□□ -0.22
IRF3-223	ENST00000599223	RAD51C	O43502	376 aa		13.66	□□□□□ -0.22
IRF3-223	ENST00000599223	PEX1	O43933	1283 aa		13.66	□□□□□ -0.22
IRF3-223	ENST00000599223	WDR47	O94967	919 aa		13.66	□□□□□ -0.22
IRF3-223	ENST00000599223	WISP3	O95389	354 aa	Predicted RBP	13.66	□□□□□ -0.22
IRF3-223	ENST00000599223	TPO	P07202	933 aa		13.66	□□□□□ -0.22
IRF3-223	ENST00000599223	H2AFX	P16104	143 aa	Predicted RBP	13.66	□□□□□ -0.22
IRF3-223	ENST00000599223	TFEB	P19484	476 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms