RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ATP5HO75947 161 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 COX7A2P14406 83 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 CAPN3P20807 821 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 CSTF2P33240 577 aaKnown RBP eCLIP13.9□□□□□ -0.18
VRK3-212ENST00000596814 RPL3P39023 403 aaKnown RBP13.9□□□□□ -0.18
VRK3-212ENST00000596814 EMP3P54852 163 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 SKP1P63208 163 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 C2orf80Q0P641 193 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 TRIP6Q15654 476 aaKnown RBP13.9□□□□□ -0.18
VRK3-212ENST00000596814 DPY19L1Q2PZI1 675 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 MUM1Q2TAK8 710 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 FAM174BQ3ZCQ3 159 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 TIGD2Q4W5G0 525 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 SPANXN4Q5MJ08 99 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 MRM1Q6IN84 353 aaKnown RBP13.9□□□□□ -0.18
VRK3-212ENST00000596814 TLDC1Q6P9B6 456 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 PRSS41Q7RTY9 318 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 GLRX5Q86SX6 157 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 DEFB124Q8NES8 71 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 NUDT8Q8WV74 236 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 TM4SF18Q96CE8 201 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 REEP4Q9H6H4 257 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 TEX10Q9NXF1 929 aaPredicted RBP13.9□□□□□ -0.18
VRK3-212ENST00000596814 TOR4AQ9NXH8 423 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 SIDT1Q9NXL6 827 aaKnown RBP13.9□□□□□ -0.18
VRK3-212ENST00000596814 SERTAD3Q9UJW9 196 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 NAALAD2Q9Y3Q0 740 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 ZFHX2Q9C0A1 2572 aaPredicted RBP13.89□□□□□ -0.19
VRK3-212ENST00000596814 DYTNA2CJ06 578 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 ZNF860A6NHJ4 632 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 BBIP1A8MTZ0 92 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 AGRPO00253 132 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 ANGPT2O15123 496 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 HNRNPCL1O60812 293 aaKnown RBP13.89□□□□□ -0.19
VRK3-212ENST00000596814 GUCY1B2O75343 617 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 MED26O95402 600 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 CCKBRP32239 447 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 MNAT1P51948 309 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 HNRNPH2P55795 449 aaKnown RBP13.89□□□□□ -0.19
VRK3-212ENST00000596814 INSM1Q01101 510 aaPredicted RBP13.89□□□□□ -0.19
VRK3-212ENST00000596814 FOXM1Q08050 763 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 STX5Q13190 355 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 COL9A2Q14055 689 aaPredicted RBP13.89□□□□□ -0.19
VRK3-212ENST00000596814 FAM53BQ14153 422 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 C16orf72Q14CZ0 275 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 HEPACAMQ14CZ8 416 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 UGT8Q16880 541 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 MMEL1Q495T6 779 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 VPS26BQ4G0F5 336 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 LACTB2Q53H82 288 aaPredicted RBP13.89□□□□□ -0.19
VRK3-212ENST00000596814 NIPAL1Q6NVV3 410 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 R3HCC1LQ7Z5L2 792 aaKnown RBP13.89□□□□□ -0.19
VRK3-212ENST00000596814 PDSS2Q86YH6 399 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 EFCAB3Q8N7B9 438 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 AGBL5Q8NDL9 886 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 VPS33AQ96AX1 596 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 RCN3Q96D15 328 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 OR6C1Q96RD1 312 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 FAIM2Q9BWQ8 316 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 MIEF1Q9NQG6 463 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 PHF11Q9UIL8 331 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 FBXW2Q9UKT8 454 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 ASB4Q9Y574 426 aa13.89□□□□□ -0.19
VRK3-212ENST00000596814 RIF1Q5UIP0 2472 aaKnown RBP13.89□□□□□ -0.19
VRK3-212ENST00000596814 A0A1W2PP18 115 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 PCNX2A6NKB5 2137 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 CFLARO15519 480 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 IL6P05231 212 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 PGRP06401 933 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 FURINP09958 794 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 S100A3P33764 101 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 KIR3DL1P43629 444 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 DGKQP52824 942 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 MC1RQ01726 317 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 FAM214AQ32MH5 1076 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 REP15Q6BDI9 236 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 CYB5D1Q6P9G0 228 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 OR7A2PQ8NGA2 310 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 OR9A4Q8NGU2 314 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 MTERF3Q96E29 417 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 PRPF18Q99633 342 aaKnown RBP13.88□□□□□ -0.19
VRK3-212ENST00000596814 RTKNQ9BST9 563 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 SLC52A3Q9NQ40 469 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 CUTCQ9NTM9 273 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 ATP6V1HQ9UI12 483 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 RARRES3Q9UL19 164 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 EXO1Q9UQ84 846 aaKnown RBP13.88□□□□□ -0.19
VRK3-212ENST00000596814 NDUFAF1Q9Y375 327 aa13.88□□□□□ -0.19
VRK3-212ENST00000596814 A0A0A6YYC8 382 aaPredicted RBP13.87□□□□□ -0.19
VRK3-212ENST00000596814 EFCAB7A8K855 629 aa13.87□□□□□ -0.19
VRK3-212ENST00000596814 I3L1I5 382 aaPredicted RBP13.87□□□□□ -0.19
VRK3-212ENST00000596814 SGK494L7N484 410 aa13.87□□□□□ -0.19
VRK3-212ENST00000596814 FBP2O00757 339 aa13.87□□□□□ -0.19
VRK3-212ENST00000596814 HYAL3O43820 417 aaPredicted RBP13.87□□□□□ -0.19
VRK3-212ENST00000596814 RDH16O75452 317 aa13.87□□□□□ -0.19
VRK3-212ENST00000596814 NSA2O95478 260 aaKnown RBP13.87□□□□□ -0.19
VRK3-212ENST00000596814 DDCP20711 480 aa13.87□□□□□ -0.19
VRK3-212ENST00000596814 ALDH9A1P49189 494 aa13.87□□□□□ -0.19
VRK3-212ENST00000596814 OLR1P78380 273 aa13.87□□□□□ -0.19
VRK3-212ENST00000596814 MXRA7P84157 204 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms