RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TESK1Q15569 626 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 C18orf21Q32NC0 220 aaPredicted RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 HP1BP3Q5SSJ5 553 aaPredicted RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 WLSQ5T9L3 541 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 MTFR2Q6P444 385 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 C3P1Q6ZMU1 363 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 KIAA0408Q6ZU52 694 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 GDF7Q7Z4P5 450 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 VN1R5Q7Z5H4 357 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 KLHDC8AQ8IYD2 350 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 CA13Q8N1Q1 262 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 SLC35F6Q8N357 371 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 SLC5A8Q8N695 610 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 AGAP11Q8TF27 550 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 SLC5A11Q8WWX8 675 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.28□□□□□ -1.41e-7■■■■□ 26.6
VPS53-213ENST00000572334 SLCO2A1Q92959 643 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 MTFMTQ96DP5 389 aaKnown RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 TSNARE1Q96NA8 513 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 NAPGQ99747 312 aaPredicted RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 ENKD1Q9H0I2 346 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 OCEL1Q9H607 264 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 PELI2Q9HAT8 420 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 CHST11Q9NPF2 352 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 ARL15Q9NXU5 204 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 ZFATQ9P243 1243 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 PPIEQ9UNP9 301 aaKnown RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 SLC22A14Q9Y267 594 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 VWA7Q9Y334 891 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 HRNRQ86YZ3 2850 aaPredicted RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 KIAA1549Q9HCM3 1950 aa6.27□□□□□ -1.4
VPS53-213ENST00000572334 NAV3Q8IVL0 2385 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 PINLYPA6NC86 204 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 A8MUA0 341 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 CES2O00748 559 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 CDK2AP1O14519 115 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 NDUFAB1O14561 156 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 EIF3HO15372 352 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS53-213ENST00000572334 PRMT3O60678 531 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 SLC25A12O75746 678 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 SASH3O75995 380 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 SEC31AO94979 1220 aaKnown RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 CLDN14O95500 239 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 SERPIND1P05546 499 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 SERPINA6P08185 405 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 ENO2P09104 434 aaPredicted RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 HIST1H2AGP0C0S8 130 aaPredicted RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 MYBL2P10244 700 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 COX6B1P14854 86 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 ZNF37AP17032 561 aaPredicted RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 HIST1H2ADP20671 130 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 GCKP35557 465 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 GRK3P35626 688 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 RFC3P40938 356 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 HNF4AP41235 474 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 ELK3P41970 407 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 SLC6A12P48065 614 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 HLCSP50747 726 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 ITGA8P53708 1063 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 OC90Q02509 493 aaPredicted RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 RBPJQ06330 500 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 TFF3Q07654 80 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 ACTN3Q08043 901 aaPredicted RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 PDAP1Q13442 181 aaKnown RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 FRG1Q14331 258 aaKnown RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 CSHL1Q14406 222 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 FASTKD3Q14CZ7 662 aaKnown RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 MAPKAPK3Q16644 382 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 BBS9Q3SYG4 887 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 CMPK2Q5EBM0 449 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 EMC4Q5J8M3 183 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 ADNP2Q6IQ32 1131 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 FAM45BPQ6NSW5 357 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 NXPE4Q6UWF7 544 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 C16orf47Q6ZP98 133 aaPredicted RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 SLCO4C1Q6ZQN7 724 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 MDGA2Q7Z553 956 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 TMPRSS11BQ86T26 416 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 THOC6Q86W42 341 aaKnown RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 ZC3HC1Q86WB0 502 aaKnown RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 CEP97Q8IW35 865 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 SULF2Q8IWU5 870 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 SCUBE1Q8IWY4 988 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS53-213ENST00000572334 GHDCQ8N2G8 530 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 RPRMLQ8N4K4 120 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 TEX9Q8N6V9 391 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 TMEM178AQ8NBL3 297 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 C16orf52Q8NHV5 167 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 RNF217Q8TC41 542 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 FAM45AQ8TCE6 357 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 BCAS4Q8TDM0 211 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 GRK7Q8WTQ7 553 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 PHF10Q8WUB8 498 aaKnown RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 ANKRD49Q8WVL7 239 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 HIST1H2AHQ96KK5 128 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 PTCHD1Q96NR3 888 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 QRFPRQ96P65 431 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 HIST1H2AJQ99878 128 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 H2AFJQ9BTM1 129 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms