RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 MAPKAPK3Q16644 382 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 HIST2H2ACQ16777 129 aaPredicted RBP16.54■□□□□ 0.24
NME3-205ENST00000563854 PAGE2BQ5JRK9 111 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 CDKL4Q5MAI5 379 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 ZNF468Q5VIY5 522 aaPredicted RBP16.54■□□□□ 0.24
NME3-205ENST00000563854 HIST2H2AA3Q6FI13 130 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 GALNTL5Q7Z4T8 443 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 FAM98AQ8NCA5 519 aaKnown RBP16.54■□□□□ 0.24
NME3-205ENST00000563854 TMEM52Q8NDY8 209 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 STAG3L4Q8TBR4 150 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 UBXN10Q96LJ8 280 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 F2RL3Q96RI0 385 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 EFCAB11Q9BUY7 163 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 DEFB126Q9BYW3 111 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 CD244Q9BZW8 370 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 PITHD1Q9GZP4 211 aaPredicted RBP16.54■□□□□ 0.24
NME3-205ENST00000563854 EHD1Q9H4M9 534 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 NT5DC2Q9H857 520 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 NUDT4Q9NZJ9 180 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 PTBP2Q9UKA9 531 aaKnown RBP16.54■□□□□ 0.24
NME3-205ENST00000563854 FBXW2Q9UKT8 454 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 MRPS33Q9Y291 106 aaKnown RBP16.54■□□□□ 0.24
NME3-205ENST00000563854 ZGRF1Q86YA3 2104 aa16.54■□□□□ 0.24
NME3-205ENST00000563854 MYOCOSA0A1B0GUC4 107 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 CLDN4O14493 209 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 WISP2O76076 250 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 SP1P08047 785 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 LTA4HP09960 611 aaKnown RBP16.53■□□□□ 0.24
NME3-205ENST00000563854 CRABP2P29373 138 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 HPDP32754 393 aaPredicted RBP16.53■□□□□ 0.24
NME3-205ENST00000563854 KCNC1P48547 511 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 MTTPP55157 894 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 ALDH6A1Q02252 535 aaKnown RBP16.53■□□□□ 0.24
NME3-205ENST00000563854 NAB1Q13506 487 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 ZRSR2Q15696 482 aaKnown RBP16.53■□□□□ 0.24
NME3-205ENST00000563854 SLC25A25Q6KCM7 469 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 LRRC70Q7Z2Q7 622 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.53■□□□□ 0.24
NME3-205ENST00000563854 LGI4Q8N135 537 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 NFAM1Q8NET5 270 aaPredicted RBP16.53■□□□□ 0.24
NME3-205ENST00000563854 KCTD4Q8WVF5 259 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 SREK1Q8WXA9 508 aaKnown RBP16.53■□□□□ 0.24
NME3-205ENST00000563854 SCMH1Q96GD3 660 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 C16orf45Q96MC5 204 aaPredicted RBP16.53■□□□□ 0.24
NME3-205ENST00000563854 QRFPRQ96P65 431 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 SERINC2Q96SA4 455 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 CSF3RQ99062 836 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 NPLQ9BXD5 320 aaPredicted RBP16.53■□□□□ 0.24
NME3-205ENST00000563854 NMRAL1Q9HBL8 299 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 COPG2Q9UBF2 871 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 OPTCQ9UBM4 332 aa16.53■□□□□ 0.24
NME3-205ENST00000563854 SUCOQ9UBS9 1254 aaKnown RBP16.53■□□□□ 0.24
NME3-205ENST00000563854 ZNF490Q9ULM2 529 aaPredicted RBP16.53■□□□□ 0.24
NME3-205ENST00000563854 POLEQ07864 2286 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 NPIPA5E9PKD4 350 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 TGFBR3LH3BV60 316 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 CCL21O00585 134 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 FCHO1O14526 889 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 KERAO60938 352 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 SLC25A12O75746 678 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 NEURL1O76050 574 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 URI1O94763 535 aaPredicted RBP16.52■□□□□ 0.24
NME3-205ENST00000563854 IFNA16P05015 189 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 EPORP19235 508 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 CYB561P49447 251 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 MLF1P58340 268 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 IRF9Q00978 393 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 TGM3Q08188 693 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 LAPTM5Q13571 262 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 MROH9Q5TGP6 573 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 ABHD17CQ6PCB6 329 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 ZNF572Q7Z3I7 529 aaPredicted RBP16.52■□□□□ 0.24
NME3-205ENST00000563854 MYLK4Q86YV6 388 aaPredicted RBP16.52■□□□□ 0.24
NME3-205ENST00000563854 SCUBE1Q8IWY4 988 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 B3GNT7Q8NFL0 401 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 ADAMTS18Q8TE60 1221 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 NXNL1Q96CM4 212 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 SEC16BQ96JE7 1060 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 MAGED4Q96JG8 741 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 FRMD6Q96NE9 622 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 LRRC1Q9BTT6 524 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 IGSF5Q9NSI5 407 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 NPIPA1Q9UND3 350 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 PCDHGB6Q9Y5F9 930 aa16.52■□□□□ 0.24
NME3-205ENST00000563854 UNC79Q9P2D8 2635 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 MLYCDO95822 493 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 TBX6O95947 436 aaPredicted RBP16.51■□□□□ 0.23
NME3-205ENST00000563854 CLCN2P51788 898 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 CASP6P55212 293 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 LIM2P55344 173 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 HSD17B7P56937 341 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 GUCY2DQ02846 1103 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 DDX39BQ13838 428 aaKnown RBP16.51■□□□□ 0.23
NME3-205ENST00000563854 ADPRMQ3LIE5 342 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 ISCA2Q86U28 154 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 NCLNQ969V3 563 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 RELTQ969Z4 430 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 TMEM125Q96AQ2 219 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 WDR34Q96EX3 536 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 ATOH8Q96SQ7 321 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms