RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 DEFB126Q9BYW3 111 aa16.08■□□□□ 0.16
VPS9D1-203ENST00000563798 CAB39LQ9H9S4 337 aa16.08■□□□□ 0.16
VPS9D1-203ENST00000563798 SAYSD1Q9NPB0 183 aa16.08■□□□□ 0.16
VPS9D1-203ENST00000563798 PTBP2Q9UKA9 531 aaKnown RBP16.08■□□□□ 0.16
VPS9D1-203ENST00000563798 ZNF490Q9ULM2 529 aaPredicted RBP16.08■□□□□ 0.16
VPS9D1-203ENST00000563798 CREBBPQ92793 2442 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 ANKDD1BA6NHY2 528 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 NCF1BA6NI72 391 aaPredicted RBP16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 NCF1CA8MVU1 366 aaPredicted RBP16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 NPIPA5E9PKD4 350 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 CYR61O00622 381 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 CLDN4O14493 209 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 FCHO1O14526 889 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 CLGNO14967 610 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 PHGDHO43175 533 aaKnown RBP16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 B3GALT2O43825 422 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 NCF1P14598 390 aaPredicted RBP16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 EPORP19235 508 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 TFEBP19484 476 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 CASP2P42575 452 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 ST13P50502 369 aaKnown RBP16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 GPX6P59796 221 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 ADORA2A-AS1P86434 159 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 PCDH1Q08174 1060 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 LAPTM5Q13571 262 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 OR4D1Q15615 310 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 TBCCQ15814 346 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 MAPKAPK3Q16644 382 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 CAPN12Q6ZSI9 719 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 C3orf62Q6ZUJ4 267 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 CHERPQ8IWX8 916 aaKnown RBP16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 GHDCQ8N2G8 530 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 SPATA6LQ8N4H0 392 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 VMP1Q96GC9 406 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 MAGED4Q96JG8 741 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 SERINC2Q96SA4 455 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 UNKQ9C0B0 810 aaKnown RBP16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 REXO4Q9GZR2 422 aaKnown RBP16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 RUBCNLQ9H714 662 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 CHST11Q9NPF2 352 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 PRTFDC1Q9NRG1 225 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 WWOXQ9NZC7 414 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 TXNDC16Q9P2K2 825 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 ZNF223Q9UK11 482 aaPredicted RBP16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 NPIPA1Q9UND3 350 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 MRPS33Q9Y291 106 aaKnown RBP16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 ABCA12Q86UK0 2595 aa16.07■□□□□ 0.16
VPS9D1-203ENST00000563798 ENO4A6NNW6 628 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 TGFBR3LH3BV60 316 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 RAD51CO43502 376 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 MYO1DO94832 1006 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 PRF1P14222 555 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 CD22P20273 847 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 MTTPP55157 894 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 RAB10P61026 200 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 MRPS25P82663 173 aaKnown RBP16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 CAV1Q03135 178 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 DOC2AQ14183 400 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 PDK4Q16654 411 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 RNFT1Q5M7Z0 435 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 GRTP1Q5TC63 336 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 TRIM40Q6P9F5 258 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 TMEM52Q8NDY8 209 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 TMEM125Q96AQ2 219 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 DPH5Q9H2P9 285 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 PRDM7Q9NQW5 492 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 TINAGQ9UJW2 476 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 DAPP1Q9UN19 280 aa16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 KLF13Q9Y2Y9 288 aaPredicted RBP16.06■□□□□ 0.16
VPS9D1-203ENST00000563798 TRBV11-1A0A0K0K1C0 115 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 ARHGAP10A1A4S6 786 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 A8MUA0 341 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 CTNSO60931 367 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 ZNF24P17028 368 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 GRNP28799 593 aaKnown RBP16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 SPRP35270 261 aaPredicted RBP16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 KCNC1P48547 511 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 HSPA7P48741 367 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 HNRNPFP52597 415 aaKnown RBP16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 SMSP52788 366 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 PLA2G16P53816 162 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 LIM2P55344 173 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 TGM3Q08188 693 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 RCN2Q14257 317 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 EFTUD2Q15029 972 aaKnown RBP eCLIP16.05■□□□□ 0.161e-14■■■■□ 24.1
VPS9D1-203ENST00000563798 XKR6Q5GH73 641 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 PAGE2BQ5JRK9 111 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 LRRC70Q7Z2Q7 622 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 CPSF7Q8N684 471 aaKnown RBP16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 C16orf52Q8NHV5 167 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 PHF10Q8WUB8 498 aaKnown RBP16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 CCT6BQ92526 530 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 ANP32BQ92688 251 aaKnown RBP16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 ESAMQ96AP7 390 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 CD244Q9BZW8 370 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 ROGDIQ9GZN7 287 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 TSPAN10Q9H1Z9 355 aaPredicted RBP16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 LYRM4Q9HD34 91 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 ADAP2Q9NPF8 381 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 CD274Q9NZQ7 290 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms