RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	LIN28A	Q9H9Z2	209 aa	Known RBP	11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	HOMER3	Q9NSC5	361 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	ZNF358	Q9NW07	568 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	TRMT1	Q9NXH9	659 aa	Known RBP	11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	ARL15	Q9NXU5	204 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	ZNF223	Q9UK11	482 aa	Predicted RBP	11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	GUCA1B	Q9UMX6	200 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	PPIE	Q9UNP9	301 aa	Known RBP	11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	MMACHC	Q9Y4U1	282 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	INTS1	Q8N201	2190 aa	Known RBP	11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	NAV3	Q8IVL0	2385 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689		A0A0G2JNJ9	132 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689		A0A1B0GVC2	190 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	OR2J2	O76002	312 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	IGHG3	P01860	377 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	FGG	P02679	453 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	CNR1	P21554	472 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	KIR2DL3	P43628	341 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	VPS41	P49754	854 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	GPR143	P51810	404 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	AP1S2	P56377	157 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	RBBP5	Q15291	538 aa	Known RBP	11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	HSP90AA5P	Q58FG0	334 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	NDUFAF5	Q5TEU4	345 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	ANKRD22	Q5VYY1	191 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	C16orf47	Q6ZP98	133 aa	Predicted RBP	11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	CA13	Q8N1Q1	262 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	ANKRD53	Q8N9V6	530 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	MCU	Q8NE86	351 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	GOT1L1	Q8NHS2	421 aa	Predicted RBP	11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	SLC5A11	Q8WWX8	675 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	ATL1	Q8WXF7	558 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	NEIL2	Q969S2	332 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	RMND5B	Q96G75	393 aa	Predicted RBP	11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	NDN	Q99608	321 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	GPATCH1	Q9BRR8	931 aa	Known RBP	11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	TTTY12	Q9BZ98	90 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	CLEC4M	Q9H2X3	399 aa	Predicted RBP	11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	KLHL31	Q9H511	634 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	XAB2	Q9HCS7	855 aa	Known RBP	11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	RASSF1	Q9NS23	344 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	MYOT	Q9UBF9	498 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689		Q9UFV3	132 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	ACAD8	Q9UKU7	415 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	MAD1L1	Q9Y6D9	718 aa		11.76	□□□□□ -0.53
SHMT2-223	ENST00000556689	TMEM200C	A6NKL6	621 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	FAM47E-STBD1	D6RA91	191 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	GOLGA8M	H3BSY2	632 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	CLDN4	O14493	209 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	PROM1	O43490	865 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	PRKN	O60260	465 aa	Predicted RBP	11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	SUSD5	O60279	629 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	WDR1	O75083	606 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	GLS	O94925	669 aa	Predicted RBP	11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	OR6B1	O95007	311 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	SERPINA6	P08185	405 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	PEX19	P40855	299 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	DGKQ	P52824	942 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	IL2	P60568	153 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	BTN3A2	P78410	334 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	BMPR2	Q13873	1038 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	SLC10A1	Q14973	349 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	SLC25A35	Q3KQZ1	300 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	BBS9	Q3SYG4	887 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	RTL6	Q6ICC9	239 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	GK5	Q6ZS86	529 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	TRIL	Q7L0X0	811 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	FAM109A	Q8N4B1	249 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	FBXL8	Q96CD0	374 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	LINGO1	Q96FE5	620 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	TSNARE1	Q96NA8	513 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	SERPINB12	Q96P63	405 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	FAM173A	Q9BQD7	235 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	AIF1L	Q9BQI0	150 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	FAM167B	Q9BTA0	163 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	SPNS1	Q9H2V7	528 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	IL1RL2	Q9HB29	575 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	DLL4	Q9NR61	685 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	PRTFDC1	Q9NRG1	225 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	IARS2	Q9NSE4	1012 aa	Known RBP	11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	ALKBH4	Q9NXW9	302 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	PLEKHA6	Q9Y2H5	1048 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	RPH3A	Q9Y2J0	694 aa	Predicted RBP	11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	FAM215A	Q9Y5M1	114 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689	DNHD1	Q96M86	4753 aa		11.75	□□□□□ -0.53
SHMT2-223	ENST00000556689		A0A1B0GTL3	188 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	CTAGE15	A4D2H0	777 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689		G3V3Y1	287 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	WWP2	O00308	870 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	SYT5	O00445	386 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	AQP7	O14520	342 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	GUCA1C	O95843	209 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	KRT14	P02533	472 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	PPP2R1B	P30154	601 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	ADH7	P40394	386 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	MAGEA5	P43359	124 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	CDKN2D	P55273	166 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	HSD17B7	P56937	341 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	STXBP1	P61764	594 aa	Known RBP	11.74	□□□□□ -0.53

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