RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 GMDSO60547 372 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 PLATP00750 562 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 CERS1P27544 350 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 DDOSTP39656 456 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 ACTBP60709 375 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 ACTG1P63261 375 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 MADCAM1Q13477 382 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 GINS1Q14691 196 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 PPP1R3AQ16821 1122 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 LIPKQ5VXJ0 399 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 C3P1Q6ZMU1 363 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 ZDHHC14Q8IZN3 488 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 ARRDC4Q8NCT1 418 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 OR2L3Q8NG85 312 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 BBS10Q8TAM1 723 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 SETD7Q8WTS6 366 aaKnown RBP12.35□□□□□ -0.43
PTCH1-212ENST00000546744 C2orf15Q8WU43 125 aaKnown RBP12.35□□□□□ -0.43
PTCH1-212ENST00000546744 SUSD6Q92537 303 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 CPNE2Q96FN4 548 aaPredicted RBP12.35□□□□□ -0.43
PTCH1-212ENST00000546744 PKP4Q99569 1192 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 CDADC1Q9BWV3 514 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 BEX2Q9BXY8 128 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 CD244Q9BZW8 370 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 LTBP3Q9NS15 1303 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 A0A1W2PQH9 124 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 G3V2L1 256 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 GRM6O15303 877 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 SNAPINO95295 136 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 TYRP14679 529 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 KELP23276 732 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 EDNRAP25101 427 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 RAP2BP61225 183 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 SMAD3P84022 425 aaKnown RBP12.35□□□□□ -0.43
PTCH1-212ENST00000546744 GK2Q14410 553 aaPredicted RBP12.35□□□□□ -0.43
PTCH1-212ENST00000546744 UGT8Q16880 541 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 GHDCQ8N2G8 530 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 ZSCAN1Q8NBB4 408 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 TMEM125Q96AQ2 219 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 EPYCQ99645 322 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 CDC6Q99741 560 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 SYT11Q9BT88 431 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 METTL8Q9H825 291 aaKnown RBP12.35□□□□□ -0.43
PTCH1-212ENST00000546744 ABCD2Q9UBJ2 740 aa12.35□□□□□ -0.43
PTCH1-212ENST00000546744 IQCMA0A1B0GVH7 501 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 A0A1W2PQL4 384 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 ANKRD34BA5PLL1 514 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 CPSF4LA6NMK7 179 aaKnown RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 RGS9O75916 674 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 POP4O95707 220 aaKnown RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 HDCP19113 662 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 PTBP1P26599 531 aaKnown RBP eCLIP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 EPHX2P34913 555 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 PRKXP51817 358 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 PPP1R8Q12972 351 aaKnown RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 EIF2S3LQ2VIR3 472 aaKnown RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 SLC30A6Q6NXT4 461 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 GALNT7Q86SF2 657 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 BEST3Q8N1M1 668 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 SOCS4Q8WXH5 440 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 SLC9A6Q92581 669 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 PSMG2Q969U7 264 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 KCTD12Q96CX2 325 aaKnown RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 TRIM64A6NGJ6 449 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 TRIM64BA6NI03 449 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 SLC22A31A6NKX4 558 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 EIF3FO00303 357 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 ICMTO60725 284 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 SEC14L2O76054 403 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 CD1DP15813 335 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 SLC6A6P31641 620 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 BMP8BP34820 402 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 CHRNA4P43681 627 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 ACTA2P62736 377 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 VAMP2P63027 116 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 ACTG2P63267 376 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 MAD2L1BPQ15013 274 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 SOWAHAQ2M3V2 549 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 ATAT1Q5SQI0 421 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 LIPJQ5W064 366 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 DNM1P34Q6PK57 102 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 BMP8AQ7Z5Y6 402 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 ACBD7Q8N6N7 88 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 PTERQ96BW5 349 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 METTL2AQ96IZ6 378 aaKnown RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 RADILQ96JH8 1075 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 ADAM2Q99965 735 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 OR51J1Q9H342 316 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 SOX17Q9H6I2 414 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 NENFQ9UMX5 172 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 ADM5C9JUS6 153 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 NIPSNAP2O75323 286 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 TPPPO94811 219 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 RAB3BP20337 219 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 ZNF763Q0D2J5 394 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 SIRPB2Q5JXA9 342 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 SVBPQ8N300 66 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 CADM2Q8N3J6 435 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 PNLDC1Q8NA58 520 aaKnown RBP12.34□□□□□ -0.43
PTCH1-212ENST00000546744 NETO2Q8NC67 525 aa12.34□□□□□ -0.43
PTCH1-212ENST00000546744 FBXO27Q8NI29 283 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms