RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 SAGE2PA6NJ88 616 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 NME2P1O60361 137 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 SLC25A12O75746 678 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 MLYCDO95822 493 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 SERPINA6P08185 405 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 RNH1P13489 461 aaKnown RBP7.91□□□□□ -1.14
USP28-215ENST00000545608 COX6B1P14854 86 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 ZNF37AP17032 561 aaPredicted RBP7.91□□□□□ -1.14
USP28-215ENST00000545608 AGAP20933 346 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 SAT1P21673 171 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 NME2P22392 152 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 ELAVL4P26378 380 aaKnown RBP7.91□□□□□ -1.14
USP28-215ENST00000545608 GDF5P43026 501 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 CYB561P49447 251 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 SMSP52788 366 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 ITGA8P53708 1063 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 TAS2R39P59534 338 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 SKP1P63208 163 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 RUNX2Q13950 521 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 ZNF460Q14592 562 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 MORF4L2Q15014 288 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 TOR1AIP1Q5JTV8 583 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 NIPAL1Q6NVV3 410 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 FGD2Q7Z6J4 655 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 ZC3HC1Q86WB0 502 aaKnown RBP7.91□□□□□ -1.14
USP28-215ENST00000545608 DOLPP1Q86YN1 238 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 KLHL7Q8IXQ5 586 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 PDIK1LQ8N165 341 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 CA13Q8N1Q1 262 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 CPSF7Q8N684 471 aaKnown RBP7.91□□□□□ -1.14
USP28-215ENST00000545608 FAM98AQ8NCA5 519 aaKnown RBP7.91□□□□□ -1.14
USP28-215ENST00000545608 TRPV3Q8NET8 790 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 ANKRD49Q8WVL7 239 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 SREK1Q8WXA9 508 aaKnown RBP7.91□□□□□ -1.14
USP28-215ENST00000545608 PDLIM2Q96JY6 352 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 AIF1LQ9BQI0 150 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 TRIM51Q9BSJ1 452 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 DEFB126Q9BYW3 111 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 FOXD3Q9UJU5 478 aaPredicted RBP7.91□□□□□ -1.14
USP28-215ENST00000545608 PRDM4Q9UKN5 801 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 ASB1Q9Y576 335 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 CLDN16Q9Y5I7 305 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 KCNE2Q9Y6J6 123 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 PCNX1Q96RV3 2341 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 ABCA12Q86UK0 2595 aa7.91□□□□□ -1.14
USP28-215ENST00000545608 FAM95CA0A1B0GW59 222 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 URADA6NGE7 173 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 PSMD12O00232 456 aaPredicted RBP7.9□□□□□ -1.14
USP28-215ENST00000545608 ADAM10O14672 748 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 TP73O15350 636 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 CLDN14O95500 239 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 AVPP01185 164 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 C1GALT1C1LP0DN25 315 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 ABOP16442 354 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 TRHRP34981 398 aaPredicted RBP7.9□□□□□ -1.14
USP28-215ENST00000545608 PTGER4P35408 488 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 KIR3DL1P43629 444 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 MEOX1P50221 254 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 HLCSP50747 726 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 GPR143P51810 404 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 HNRNPFP52597 415 aaKnown RBP7.9□□□□□ -1.14
USP28-215ENST00000545608 BTN3A2P78410 334 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 CDKL1Q00532 357 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 DMTNQ08495 405 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 MGAT5Q09328 741 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 FRG1Q14331 258 aaKnown RBP7.9□□□□□ -1.14
USP28-215ENST00000545608 FASTKD3Q14CZ7 662 aaKnown RBP7.9□□□□□ -1.14
USP28-215ENST00000545608 TSNQ15631 228 aaKnown RBP7.9□□□□□ -1.14
USP28-215ENST00000545608 C3P1Q6ZMU1 363 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 SLCO4C1Q6ZQN7 724 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 GDF7Q7Z4P5 450 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 CEP97Q8IW35 865 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 SULF2Q8IWU5 870 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.9□□□□□ -1.14
USP28-215ENST00000545608 ARMC10Q8N2F6 343 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 GHDCQ8N2G8 530 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 NKAPQ8N5F7 415 aaKnown RBP7.9□□□□□ -1.14
USP28-215ENST00000545608 APCDD1LQ8NCL9 501 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 TMEM52Q8NDY8 209 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 AGAP11Q8TF27 550 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 ANKRD7Q92527 254 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 LRRC39Q96DD0 335 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 MTFMTQ96DP5 389 aaKnown RBP7.9□□□□□ -1.14
USP28-215ENST00000545608 CAPZA3Q96KX2 299 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 LURAP1Q96LR2 239 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 EGFL8Q99944 293 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 TRIM8Q9BZR9 551 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 GPAMQ9HCL2 828 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 SMYD2Q9NRG4 433 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 MOCS1Q9NZB8 636 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 ZNF223Q9UK11 482 aaPredicted RBP7.9□□□□□ -1.14
USP28-215ENST00000545608 OARD1Q9Y530 152 aa7.9□□□□□ -1.14
USP28-215ENST00000545608 PKDREJQ9NTG1 2253 aa7.9□□□□□ -1.15
USP28-215ENST00000545608 TRBV11-1A0A0K0K1C0 115 aa7.89□□□□□ -1.15
USP28-215ENST00000545608 LRIT2A6NDA9 550 aa7.89□□□□□ -1.15
USP28-215ENST00000545608 TAPBPO15533 448 aa7.89□□□□□ -1.15
USP28-215ENST00000545608 ZSCAN12O43309 604 aa7.89□□□□□ -1.15
USP28-215ENST00000545608 PEX1O43933 1283 aa7.89□□□□□ -1.15
USP28-215ENST00000545608 PRKNO60260 465 aaPredicted RBP7.89□□□□□ -1.15
USP28-215ENST00000545608 PRAMEF4O60810 478 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms