RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	C2CD4A	Q8NCU7	369 aa	Predicted RBP	14.64	□□□□□ -0.07
LMNA-223	ENST00000515459	TSNARE1	Q96NA8	513 aa		14.64	□□□□□ -0.07
LMNA-223	ENST00000515459	AIF1L	Q9BQI0	150 aa		14.64	□□□□□ -0.07
LMNA-223	ENST00000515459	ST6GALNAC2	Q9UJ37	374 aa		14.64	□□□□□ -0.07
LMNA-223	ENST00000515459	NIPBL	Q6KC79	2804 aa	eCLIP	14.64	□□□□□ -0.07	1e-6	■■■□□ 18.6
LMNA-223	ENST00000515459	EML6	Q6ZMW3	1958 aa		14.64	□□□□□ -0.07
LMNA-223	ENST00000515459		A0A0G2JNJ9	132 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	CTAGE15	A4D2H0	777 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	PRKN	O60260	465 aa	Predicted RBP	14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	OR6B1	O95007	311 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	GUCA1C	O95843	209 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	IGHG3	P01860	377 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	SERPINA6	P08185	405 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	GLI4	P10075	376 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	MAGEA3	P43357	314 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	CDKN2D	P55273	166 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	DLX5	P56178	289 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	HSD17B7	P56937	341 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	IL2	P60568	153 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	REEP5	Q00765	189 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	RBBP5	Q15291	538 aa	Known RBP	14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	TOR1AIP1	Q5JTV8	583 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	ARSK	Q6UWY0	536 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	C16orf47	Q6ZP98	133 aa	Predicted RBP	14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	GK5	Q6ZS86	529 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	CTAGE6	Q86UF2	777 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	SCUBE1	Q8IWY4	988 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	GABPB2	Q8TAK5	448 aa	Predicted RBP	14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	FBXL8	Q96CD0	374 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	SIGLEC10	Q96LC7	697 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	LIN28A	Q9H9Z2	209 aa	Known RBP	14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	PELI2	Q9HAT8	420 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	PRTFDC1	Q9NRG1	225 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	ZNF358	Q9NW07	568 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	MYOT	Q9UBF9	498 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459		Q9UFV3	132 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	EDAR	Q9UNE0	448 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	DYRK1B	Q9Y463	629 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	FAM215A	Q9Y5M1	114 aa		14.63	□□□□□ -0.07
LMNA-223	ENST00000515459	ANKHD1	Q8IWZ3	2542 aa	Known RBP	14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	TMEM200C	A6NKL6	621 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	C4orf51	C9J302	202 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	CLDN4	O14493	209 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	GLS	O94925	669 aa	Predicted RBP	14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	ENO2	P09104	434 aa	Predicted RBP	14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	SOX3	P41225	446 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	BTN3A2	P78410	334 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	SLC13A2	Q13183	592 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	SLC25A35	Q3KQZ1	300 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	BBS9	Q3SYG4	887 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	XKR6	Q5GH73	641 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	RBM20	Q5T481	1227 aa	Known RBP	14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	RTL6	Q6ICC9	239 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	TMPRSS11B	Q86T26	416 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	ZZZ3	Q8IYH5	903 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	AGGF1	Q8N302	714 aa	eCLIP	14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	FAM109A	Q8N4B1	249 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	GPATCH11	Q8N954	259 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	RMND5B	Q96G75	393 aa	Predicted RBP	14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	FAR2	Q96K12	515 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	FAM173A	Q9BQD7	235 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	CLEC4M	Q9H2X3	399 aa	Predicted RBP	14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	LIME1	Q9H400	295 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	ADAP2	Q9NPF8	381 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	CLDN16	Q9Y5I7	305 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459	LIPG	Q9Y5X9	500 aa		14.62	□□□□□ -0.07
LMNA-223	ENST00000515459		A0A0G2JMM0	328 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459		A0A1B0GVC2	190 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459		A0A1W2PPB8	328 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459		A0A1W2PRS3	328 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	KIR3DP1	A8MWS1	328 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459		G3V3Y1	287 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	TGFBR3L	H3BV60	316 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	WWP2	O00308	870 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	AQP7	O14520	342 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	WDR1	O75083	606 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	DRD2	P14416	443 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	CNR1	P21554	472 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	DNASE1	P24855	282 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	GABRB3	P28472	473 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	PPP2R1B	P30154	601 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	MAGEA5	P43359	124 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	STXBP1	P61764	594 aa	Known RBP	14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	FOXD4	Q12950	439 aa	Predicted RBP	14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	PDAP1	Q13442	181 aa	Known RBP	14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	RUNX2	Q13950	521 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	ZNF750	Q32MQ0	723 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	NXPE4	Q6UWF7	544 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	RTL4	Q6ZR62	310 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	TRIL	Q7L0X0	811 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	THOC6	Q86W42	341 aa	Known RBP	14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	LIX1L	Q8IVB5	337 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	TMEM132C	Q8N3T6	1108 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	RASL10B	Q96S79	203 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	GPATCH1	Q9BRR8	931 aa	Known RBP	14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	NPL	Q9BXD5	320 aa	Predicted RBP	14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	AICDA	Q9GZX7	198 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	IL1RL2	Q9HB29	575 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	ACAD8	Q9UKU7	415 aa		14.61	□□□□□ -0.07
LMNA-223	ENST00000515459	MRPS33	Q9Y291	106 aa	Known RBP	14.61	□□□□□ -0.07

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms