RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 QRFPRQ96P65 431 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 OR1F2PQ96R84 312 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 MTERF1Q99551 399 aaKnown RBP7.61□□□□□ -1.19
USP40-216ENST00000485943 LPAR4Q99677 370 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 PAIP2Q9BPZ3 127 aaKnown RBP7.61□□□□□ -1.19
USP40-216ENST00000485943 MCMBPQ9BTE3 642 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 SPRY4Q9C004 299 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 SLC25A18Q9H1K4 315 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 AKIRIN1Q9H9L7 192 aaPredicted RBP7.61□□□□□ -1.19
USP40-216ENST00000485943 PFDN4Q9NQP4 134 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 ZNF71Q9NQZ8 489 aaPredicted RBP7.61□□□□□ -1.19
USP40-216ENST00000485943 P4HTMQ9NXG6 502 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 FBXL4Q9UKA2 621 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 SH2B3Q9UQQ2 575 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 ZNF451Q9Y4E5 1061 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 DYTNA2CJ06 578 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 SAP18O00422 153 aaKnown RBP7.6□□□□□ -1.19
USP40-216ENST00000485943 DPM1O60762 260 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 ALOX12BO75342 701 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 MYO1DO94832 1006 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 FHP07954 510 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 CPA3P15088 417 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 CPN2P22792 545 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 PTX3P26022 381 aaPredicted RBP7.6□□□□□ -1.19
USP40-216ENST00000485943 PPP2R1BP30154 601 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 CASRP41180 1078 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 OR4D2P58180 307 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 HERVK_113P63132 956 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 OLR1P78380 273 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 NFKB2Q00653 900 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 CLCQ05315 142 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 IL10RAQ13651 578 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 ABRAXAS2Q15018 415 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 ZRSR2Q15696 482 aaKnown RBP7.6□□□□□ -1.19
USP40-216ENST00000485943 TBCCQ15814 346 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 SYT16Q17RD7 645 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 BTBD16Q32M84 506 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 TMEM35AQ53FP2 167 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 SPDYAQ5MJ70 313 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 C10orf62Q5T681 223 aaPredicted RBP7.6□□□□□ -1.19
USP40-216ENST00000485943 UBAP2Q5T6F2 1119 aaKnown RBP7.6□□□□□ -1.19
USP40-216ENST00000485943 AGAP7PQ5VUJ5 663 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 LCN10Q6JVE6 187 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 ASB18Q6ZVZ8 466 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 VN1R4Q7Z5H5 301 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 TDRPQ86YL5 185 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 KBTBD2Q8IY47 623 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 GALNT16Q8N428 558 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 ZADH2Q8N4Q0 377 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 OR2L5Q8NG80 312 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 OR4K1Q8NGD4 311 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 TRPC4APQ8TEL6 797 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 ISL2Q96A47 359 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 APOPT1Q96IL0 206 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 CNDP1Q96KN2 507 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 ZNF285Q96NJ3 590 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 AGAP4Q96P64 663 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 SERINC2Q96SA4 455 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 SERPINI1Q99574 410 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 TBCDQ9BTW9 1192 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 ERVK-6Q9BXR3 956 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 ILKAPQ9H0C8 392 aaPredicted RBP7.6□□□□□ -1.19
USP40-216ENST00000485943 SLC26A1Q9H2B4 701 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 C12orf49Q9H741 205 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 NT5DC2Q9H857 520 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 CLK4Q9HAZ1 481 aaKnown RBP7.6□□□□□ -1.19
USP40-216ENST00000485943 EML4Q9HC35 981 aaKnown RBP7.6□□□□□ -1.19
USP40-216ENST00000485943 ZNF160Q9HCG1 818 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 SLAMF7Q9NQ25 335 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 MS4A12Q9NXJ0 267 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 TMEM216Q9P0N5 145 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 PHF11Q9UIL8 331 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 TUBD1Q9UJT1 453 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 FBXW2Q9UKT8 454 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 SLC12A4Q9UP95 1085 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 FIS1Q9Y3D6 152 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 PTPRQQ9UMZ3 2332 aa7.6□□□□□ -1.19
USP40-216ENST00000485943 FREM2Q5SZK8 3169 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 A0A1W2PPM1 405 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 BLACEA4D250 179 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 A8MT66 165 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 H3BQF6 201 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 CTIFO43310 598 aaKnown RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 CHST10O43529 356 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 OR10H2O60403 315 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 GALR3O60755 368 aaPredicted RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 ULK1O75385 1050 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 SPAG7O75391 227 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 HPP00738 406 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 C1QAP02745 245 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 NUDT17P0C025 328 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 TSPAN8P19075 237 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 WT1P19544 449 aaPredicted RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 CRHR1P34998 444 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 PIK3CBP42338 1070 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 CDH13P55290 713 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 RAB38P57729 211 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 ARG2P78540 354 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 EXT1Q16394 746 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 DCAF10Q5QP82 559 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms