RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PIGQQ9BRB3 760 aa7.35□□□□□ -1.23
USP54-211ENST00000474929 SAE1Q9UBE0 346 aaPredicted RBP7.35□□□□□ -1.23
USP54-211ENST00000474929 IP6K2Q9UHH9 426 aa7.35□□□□□ -1.23
USP54-211ENST00000474929 FEZ2Q9UHY8 353 aaPredicted RBP7.35□□□□□ -1.23
USP54-211ENST00000474929 VWFP04275 2813 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 BIRC6Q9NR09 4857 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 IGKV3D-11A0A0A0MRZ8 115 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 A0A1W2PPV9 198 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 OR2W5A6NFC9 320 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 KPNA5O15131 536 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 SSX4O60224 188 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 SMNDC1O75940 238 aaKnown RBP eCLIP7.34□□□□□ -1.23
USP54-211ENST00000474929 MYO1DO94832 1006 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 CYP1A2P05177 515 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 CD48P09326 243 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 CCDC166P0CW27 439 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 CCKARP32238 428 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 PPARGP37231 505 aaPredicted RBP7.34□□□□□ -1.23
USP54-211ENST00000474929 ARHGAP25P42331 645 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 KCNJ5P48544 419 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 KCNC1P48547 511 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 TRPC1P48995 793 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 PRDX1Q06830 199 aaKnown RBP7.34□□□□□ -1.23
USP54-211ENST00000474929 DBN1Q16643 649 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 CR1LQ2VPA4 569 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 SLC22A10Q63ZE4 541 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 ICE2Q659A1 982 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 HSDL2Q6YN16 418 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 PRSS41Q7RTY9 318 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 VSIG1Q86XK7 387 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 BANPQ8N9N5 519 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 OR5L2Q8NGL0 311 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 OR13C4Q8NGS5 318 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 OR8K3Q8NH51 312 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 ZCCHC10Q8TBK6 192 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 ENOX1Q8TC92 643 aaKnown RBP7.34□□□□□ -1.23
USP54-211ENST00000474929 ASB11Q8WXH4 323 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 FAM168AQ92567 244 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 NCLNQ969V3 563 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 C11orf24Q96F05 449 aaPredicted RBP7.34□□□□□ -1.23
USP54-211ENST00000474929 ZC3HAV1LQ96H79 300 aaKnown RBP7.34□□□□□ -1.23
USP54-211ENST00000474929 FCRL5Q96RD9 977 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 UCN2Q96RP3 112 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 ACAT2Q9BWD1 397 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 CNIH4Q9P003 139 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 PTBP2Q9UKA9 531 aaKnown RBP7.34□□□□□ -1.23
USP54-211ENST00000474929 MAPRE3Q9UPY8 281 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 NAALAD2Q9Y3Q0 740 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 MMACHCQ9Y4U1 282 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 HEY1Q9Y5J3 304 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 SNX8Q9Y5X2 465 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 IKBKGQ9Y6K9 419 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 MALRD1Q5VYJ5 2156 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 HEATR5BQ9P2D3 2071 aa7.34□□□□□ -1.23
USP54-211ENST00000474929 KCNE1BA0A087WTH5 132 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 FRG2CA6NGY1 282 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 KDM4EB2RXH2 506 aaPredicted RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 GPC4O75487 556 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 ANXA9O76027 345 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 VENTXO95231 258 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 FTCDO95954 541 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 ACTL6AO96019 429 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 DANCRP0C864 163 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 CCL3P10147 92 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 ERGP11308 486 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 GZMAP12544 262 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 TCF4P15884 667 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 FERP16591 822 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 NFKB1P19838 968 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 SSR1P43307 286 aaKnown RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 GPR143P51810 404 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 GEMP55040 296 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 SLC10A2Q12908 348 aaPredicted RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 FOXF2Q12947 444 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 PTPRCAPQ14761 206 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 ZNF750Q32MQ0 723 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 AWAT1Q58HT5 328 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 ENPP6Q6UWR7 440 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 DNAJC14Q6Y2X3 702 aaPredicted RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 LDB1Q86U70 411 aaPredicted RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 PAQR8Q8TEZ7 354 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 SMAP2Q8WU79 429 aaPredicted RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 MRPL24Q96A35 216 aaKnown RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 TP53INP1Q96A56 240 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 INTS12Q96CB8 462 aaKnown RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 DTNBP1Q96EV8 351 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 OLFM3Q96PB7 478 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 PPP1R2P1Q96PQ5 205 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 BHLHE41Q9C0J9 482 aaPredicted RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 FAM96AQ9H5X1 160 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 OCEL1Q9H607 264 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 FAM114A2Q9NRY5 505 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 MED29Q9NX70 200 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 KLHL8Q9P2G9 620 aaPredicted RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 CIDEBQ9UHD4 219 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 LCMT1Q9UIC8 334 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 RUVBL2Q9Y230 463 aaKnown RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 RNF115Q9Y4L5 304 aa7.33□□□□□ -1.24
USP54-211ENST00000474929 MAGED1Q9Y5V3 778 aaPredicted RBP7.33□□□□□ -1.24
USP54-211ENST00000474929 MED12Q93074 2177 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms