RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 IGKV3D-11A0A0A0MRZ8 115 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 A0A1B0GUH1 482 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 UBXN8O00124 270 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 HNRNPRO43390 633 aaKnown RBP14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 B3GALT2O43825 422 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 UNC5CO95185 931 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 TBX6O95947 436 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 EPORP19235 508 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 CD22P20273 847 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 ZNF10P21506 573 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 CERS1P27544 350 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 CRABP2P29373 138 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 KCNC1P48547 511 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 HNRNPFP52597 415 aaKnown RBP14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 RAB38P57729 211 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 IRF8Q02556 426 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 CHIT1Q13231 466 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 NAB1Q13506 487 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 BMPR2Q13873 1038 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 UAP1Q16222 522 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 SP5Q6BEB4 398 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 LRRC70Q7Z2Q7 622 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 RPS19BP1Q86WX3 136 aaKnown RBP14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 OR2L5Q8NG80 312 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 DNAJB8Q8NHS0 232 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 STAG3L4Q8TBR4 150 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 LRRC1Q9BTT6 524 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 EFCAB11Q9BUY7 163 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 NPLQ9BXD5 320 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 CD244Q9BZW8 370 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 COPS7BQ9H9Q2 264 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 NMRAL1Q9HBL8 299 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 PRTFDC1Q9NRG1 225 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 PNO1Q9NRX1 252 aaKnown RBP14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 SEC14L3Q9UDX4 400 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 ZNF490Q9ULM2 529 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 MMACHCQ9Y4U1 282 aa14.71□□□□□ -0.05
CCDC88B-205ENST00000472524 PRSS44E7EML9 344 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 KERAO60938 352 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 URI1O94763 535 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 MYO1DO94832 1006 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 LTA4HP09960 611 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 CD46P15529 392 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 TPP2P29144 1249 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 EEF1DP29692 281 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 HPDP32754 393 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 IRF9Q00978 393 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 GUCY2DQ02846 1103 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 SLC13A2Q13183 592 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 LAPTM5Q13571 262 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 HIST2H2ACQ16777 129 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 PAGE2BQ5JRK9 111 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 MROH9Q5TGP6 573 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 HIST2H2AA3Q6FI13 130 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 ISCA2Q86U28 154 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 LGI4Q8N135 537 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 TMEM52Q8NDY8 209 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 NFAM1Q8NET5 270 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 KCTD4Q8WVF5 259 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 RELTQ969Z4 430 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 NXNL1Q96CM4 212 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 WDR34Q96EX3 536 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 SEC16BQ96JE7 1060 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 QRFPRQ96P65 431 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 F2RL3Q96RI0 385 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 ATOH8Q96SQ7 321 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 IGSF5Q9NSI5 407 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 LRFN1Q9P244 771 aa14.7□□□□□ -0.06
CCDC88B-205ENST00000472524 TRBV11-1A0A0K0K1C0 115 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 TGFBR3LH3BV60 316 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 SH3BGRLO75368 114 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 PCNAP12004 261 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 GRNP28799 593 aaKnown RBP14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 PPP2R1BP30154 601 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 MSH2P43246 934 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 MTTPP55157 894 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 ADPRMQ3LIE5 342 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 ZNF468Q5VIY5 522 aaPredicted RBP14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 ABHD17CQ6PCB6 329 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 GALNTL5Q7Z4T8 443 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 CLNKQ7Z7G1 428 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 SCUBE1Q8IWY4 988 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 HORMAD2Q8N7B1 307 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 TMEM178AQ8NBL3 297 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 THAP3Q8WTV1 239 aaPredicted RBP14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 SCMH1Q96GD3 660 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 SERINC2Q96SA4 455 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 CSF3RQ99062 836 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 DEFB126Q9BYW3 111 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 TSPAN10Q9H1Z9 355 aaPredicted RBP14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 ZDHHC18Q9NUE0 388 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 OPTCQ9UBM4 332 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 SH3BGRL2Q9UJC5 107 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 MRPS33Q9Y291 106 aaKnown RBP14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 ACOT9Q9Y305 439 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 PCDHGB6Q9Y5F9 930 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 FBN2P35556 2912 aa14.69□□□□□ -0.06
CCDC88B-205ENST00000472524 TRGV8A0A0C4DH27 118 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 MYOCOSA0A1B0GUC4 107 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 K7EPI3 171 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms