RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 LRRC70Q7Z2Q7 622 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 ARHGEF39Q8N4T4 335 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 OR9A4Q8NGU2 314 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 SSC4DQ8WTU2 575 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 METTL21AQ8WXB1 218 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 PSMG3-AS1Q96PY0 264 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 MACROD1Q9BQ69 325 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 TMEM79Q9BSE2 394 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 HAUS8Q9BT25 410 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 GSTO2Q9H4Y5 243 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 RIC8BQ9NVN3 520 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 HAO1Q9UJM8 370 aa17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 MRPS2Q9Y399 296 aaKnown RBP17.02■□□□□ 0.32
SQSTM1-204ENST00000453046 USP9YO00507 2555 aaPredicted RBP17.02■□□□□ 0.31
SQSTM1-204ENST00000453046 DOCK10Q96BY6 2186 aa17.02■□□□□ 0.31
SQSTM1-204ENST00000453046 CNTRLQ7Z7A1 2325 aa17.02■□□□□ 0.31
SQSTM1-204ENST00000453046 MAST4O15021 2626 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 IGHV1-45A0A0A0MS14 117 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 SEMA7AO75326 666 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 WFS1O76024 890 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 SUPT7LO94864 414 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 KLHL18O94889 574 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 SIX3O95343 332 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 NSA2O95478 260 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 HSPA4LO95757 839 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 FAM107AO95990 144 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 PRR35P0CG20 571 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 GGT5P36269 586 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 PIK3CGP48736 1102 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 MFAP5Q13361 173 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 ZNF169Q14929 603 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 TLR1Q15399 786 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 MINDY4Q4G0A6 757 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 UNC50Q53HI1 259 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 CRB2Q5IJ48 1285 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 VN1R4Q7Z5H5 301 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 ASPGQ86U10 573 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 CRLF3Q8IUI8 442 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 ZC3H7AQ8IWR0 971 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 ZCCHC10Q8TBK6 192 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 ZNF483Q8TF39 744 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 SLC13A3Q8WWT9 602 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 PYCR2Q96C36 320 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 LMF1Q96S06 567 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 SORT1Q99523 831 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 SGPP1Q9BX95 441 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 EML4Q9HC35 981 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 ANKHQ9HCJ1 492 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 PTGFRNQ9P2B2 879 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 PCTPQ9UKL6 214 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 SH2B3Q9UQQ2 575 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 STK38LQ9Y2H1 464 aa17.01■□□□□ 0.31
SQSTM1-204ENST00000453046 DYTNA2CJ06 578 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 ANKUB1A6NFN9 424 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 E2F3O00716 465 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 TAPBPO15533 448 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 ITM2AO43736 263 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 BMP10O95393 424 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 TGDSO95455 350 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 CBX6O95503 412 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 SERPINA7P05543 415 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 SLC35G6P0C7Q6 338 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 C8orf89P0DMQ9 161 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 NPPBP16860 134 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 IL1RNP18510 177 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 BCL6P41182 706 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 SLC6A12P48065 614 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 AGTR2P50052 363 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 AP2B1P63010 937 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 ARG2P78540 354 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 LCP2Q13094 533 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 PRSS41Q7RTY9 318 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 NAV2Q8IVL1 2488 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 KLHDC8AQ8IYD2 350 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 SIRT6Q8N6T7 355 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 OR51Q1Q8NH59 317 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 BRIX1Q8TDN6 353 aaKnown RBP17■□□□□ 0.31
SQSTM1-204ENST00000453046 HCN3Q9P1Z3 774 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 EPB41L3Q9Y2J2 1087 aaPredicted RBP17■□□□□ 0.31
SQSTM1-204ENST00000453046 RAP2CQ9Y3L5 183 aa17■□□□□ 0.31
SQSTM1-204ENST00000453046 SPTAN1Q13813 2472 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 SGK494L7N484 410 aa16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 RRP9O43818 475 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 LCMT2O60294 686 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 LYPLA1O75608 230 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 STK16O75716 305 aa16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 MLYCDO95822 493 aa16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 TROVE2P10155 538 aaKnown RBP eCLIP16.99■□□□□ 0.315e-7■□□□□ 10.5
SQSTM1-204ENST00000453046 ICAM2P13598 275 aa16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 ARRB2P32121 409 aa16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 TSFMP43897 325 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 HSPA7P48741 367 aa16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 CCR8P51685 355 aa16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 HK2P52789 917 aa16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 SNRPNP63162 240 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 ARL13AQ5H913 290 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 B3GNTL1Q67FW5 361 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 TMEM214Q6NUQ4 689 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 CPLX4Q7Z7G2 160 aa16.99■□□□□ 0.31
SQSTM1-204ENST00000453046 TBC1D19Q8N5T2 526 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms