RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 P2RX2Q9UBL9 471 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 UTS2RQ9UKP6 389 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 ZNF232Q9UNY5 417 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 SLC9A8Q9Y2E8 581 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 ZNF106Q9H2Y7 1883 aaKnown RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 IGHV1OR15-9A0A0B4J2B8 117 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 LILRA5A6NI73 299 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 NOBOXO60393 691 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 TPST1O60507 370 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 NTRK1P04629 796 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 GSNP06396 782 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 LAMP1P11279 417 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 CD72P21854 359 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 IFNGR2P38484 337 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 DUSP3P51452 185 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 AFF3P51826 1226 aaKnown RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 EPHA4P54764 986 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 MS4A2Q01362 244 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 IFI44LQ53G44 452 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 PDSS2Q86YH6 399 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 RIMKLAQ8IXN7 391 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 FAM156AQ8NDB6 213 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 OR2A1Q8NGT9 310 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 TPSD1Q9BZJ3 242 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 MBD1Q9UIS9 605 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 LIPT1Q9Y234 373 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 PLXNA2O75051 1894 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 A0A1B0GTW7 788 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 TIPRLO75663 272 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 GPX2P18283 190 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 HIST1H1TP22492 207 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 BTN3A2P78410 334 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 SCARB2Q14108 478 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 UGT8Q16880 541 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 FAM214AQ32MH5 1076 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 SPESP1Q6UW49 350 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.01□□□□□ -1.13
USP54-203ENST00000418501 LINC00471Q8N535 108 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 PIK3C3Q8NEB9 887 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 GOT1L1Q8NHS2 421 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 EZH1Q92800 747 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 TMEM74Q96NL1 305 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 YTHDF1Q9BYJ9 559 aaKnown RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 KAT8Q9H7Z6 458 aaKnown RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 CUEDC1Q9NWM3 386 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 VAPAQ9P0L0 249 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 PCDHGA4Q9Y5G9 962 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 CSNK1G3Q9Y6M4 447 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 TRBV23OR9-2A0A075B6M9 112 aa8□□□□□ -1.13
USP54-203ENST00000418501 SAC3D1A6NKF1 404 aa8□□□□□ -1.13
USP54-203ENST00000418501 SAP18O00422 153 aaKnown RBP8□□□□□ -1.13
USP54-203ENST00000418501 DUX1O43812 170 aa8□□□□□ -1.13
USP54-203ENST00000418501 ERAL1O75616 437 aaKnown RBP8□□□□□ -1.13
USP54-203ENST00000418501 C6orf47O95873 294 aa8□□□□□ -1.13
USP54-203ENST00000418501 SERPINA1P01009 418 aa8□□□□□ -1.13
USP54-203ENST00000418501 PROS1P07225 676 aa8□□□□□ -1.13
USP54-203ENST00000418501 NME1P15531 152 aaKnown RBP8□□□□□ -1.13
USP54-203ENST00000418501 UGT2B7P16662 529 aa8□□□□□ -1.13
USP54-203ENST00000418501 AK4P27144 223 aaPredicted RBP8□□□□□ -1.13
USP54-203ENST00000418501 SLAMF1Q13291 335 aa8□□□□□ -1.13
USP54-203ENST00000418501 MLC1Q15049 377 aa8□□□□□ -1.13
USP54-203ENST00000418501 LYSMD4Q5XG99 296 aa8□□□□□ -1.13
USP54-203ENST00000418501 PLXDC1Q8IUK5 500 aa8□□□□□ -1.13
USP54-203ENST00000418501 GPR135Q8IZ08 494 aa8□□□□□ -1.13
USP54-203ENST00000418501 SPPL2AQ8TCT8 520 aa8□□□□□ -1.13
USP54-203ENST00000418501 LRTOMTQ8WZ04 291 aa8□□□□□ -1.13
USP54-203ENST00000418501 TCTN2Q96GX1 697 aa8□□□□□ -1.13
USP54-203ENST00000418501 TEFMQ96QE5 360 aaKnown RBP8□□□□□ -1.13
USP54-203ENST00000418501 C17orf62Q9BQA9 187 aa8□□□□□ -1.13
USP54-203ENST00000418501 SLC35C2Q9NQQ7 365 aa8□□□□□ -1.13
USP54-203ENST00000418501 PDE4DIPQ5VU43 2346 aa8□□□□□ -1.13
USP54-203ENST00000418501 EME2A4GXA9 379 aaPredicted RBP8□□□□□ -1.13
USP54-203ENST00000418501 MYO1GB0I1T2 1018 aa8□□□□□ -1.13
USP54-203ENST00000418501 G3V2T6 193 aa8□□□□□ -1.13
USP54-203ENST00000418501 BCAT2O15382 392 aaPredicted RBP8□□□□□ -1.13
USP54-203ENST00000418501 COQ9O75208 318 aa8□□□□□ -1.13
USP54-203ENST00000418501 AK1P00568 194 aa8□□□□□ -1.13
USP54-203ENST00000418501 EIF2S1P05198 315 aaKnown RBP8□□□□□ -1.13
USP54-203ENST00000418501 NR2F1P10589 423 aa8□□□□□ -1.13
USP54-203ENST00000418501 ALOX12P18054 663 aa8□□□□□ -1.13
USP54-203ENST00000418501 MSX2P35548 267 aaPredicted RBP8□□□□□ -1.13
USP54-203ENST00000418501 NCBP2P52298 156 aaKnown RBP eCLIP8□□□□□ -1.13
USP54-203ENST00000418501 CHN2P52757 468 aa8□□□□□ -1.13
USP54-203ENST00000418501 CRISP3P54108 245 aa8□□□□□ -1.13
USP54-203ENST00000418501 PDE7AQ13946 482 aa8□□□□□ -1.13
USP54-203ENST00000418501 SIM2Q14190 667 aaPredicted RBP8□□□□□ -1.13
USP54-203ENST00000418501 EIF3MQ7L2H7 374 aaKnown RBP8□□□□□ -1.13
USP54-203ENST00000418501 BBS10Q8TAM1 723 aa8□□□□□ -1.13
USP54-203ENST00000418501 ITFG2Q969R8 447 aa8□□□□□ -1.13
USP54-203ENST00000418501 PRO3102Q9H379 93 aa8□□□□□ -1.13
USP54-203ENST00000418501 SEMA6CQ9H3T2 930 aa8□□□□□ -1.13
USP54-203ENST00000418501 TM9SF3Q9HD45 589 aa8□□□□□ -1.13
USP54-203ENST00000418501 PNPLA3Q9NST1 481 aa8□□□□□ -1.13
USP54-203ENST00000418501 FBXW2Q9UKT8 454 aa8□□□□□ -1.13
USP54-203ENST00000418501 WDR37Q9Y2I8 494 aa8□□□□□ -1.13
USP54-203ENST00000418501 FXYD1O00168 92 aa8□□□□□ -1.13
USP54-203ENST00000418501 AQP9O43315 295 aa8□□□□□ -1.13
USP54-203ENST00000418501 FHP07954 510 aa8□□□□□ -1.13
USP54-203ENST00000418501 CD22P20273 847 aa8□□□□□ -1.13
USP54-203ENST00000418501 SLC19A1P41440 591 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms