RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TDP1Q9NUW8 608 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 NPFFR2Q9Y5X5 522 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 MBOAT1Q6ZNC8 495 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 OR5M3Q8NGP4 307 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 SLC22A17Q8WUG5 538 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 PTERQ96BW5 349 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 IL12RB2Q99665 862 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 CADM1Q9BY67 442 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 DNAJB6O75190 326 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 XRCC1P18887 633 aaPredicted RBP12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 P2RX1P51575 399 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 RPS14P62263 151 aaKnown RBP12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 BCL2L15Q5TBC7 163 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 IFNL1Q8IU54 200 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 PRSS58Q8IYP2 241 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 EPS8L1Q8TE68 723 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 SOCS4Q8WXH5 440 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 CNOT9Q92600 299 aaKnown RBP12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 SNX18Q96RF0 628 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 KIF25Q9UIL4 384 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 NAALAD2Q9Y3Q0 740 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 NDUFV1P49821 464 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 HIST2H3PS2Q5TEC6 136 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 FAM71AQ8IYT1 594 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 HS3ST5Q8IZT8 346 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 BTF3L4Q96K17 158 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 PLA2G12BQ9BX93 195 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 PREBQ9HCU5 417 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 NCDNQ9UBB6 729 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 TMEM2Q9UHN6 1383 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 RALGPS1Q5JS13 557 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 CFAP52Q8N1V2 620 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 DEDD2Q8WXF8 326 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 C1orf21Q9H246 121 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 PTGES2Q9H7Z7 377 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 ACTR10Q9NZ32 417 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 CDC7O00311 574 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 MAGEB4O15481 346 aaPredicted RBP12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 CDK14O94921 469 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 TFP02787 698 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 BCHEP06276 602 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 ESCO2Q56NI9 601 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 NOMO2Q5JPE7 1267 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 LIPKQ5VXJ0 399 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 STRADAQ7RTN6 431 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 OR4Q3Q8NH05 313 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 SHC3Q92529 594 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 CTPS2Q9NRF8 586 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 TGFBIQ15582 683 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 TAF9Q16594 264 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 AQP12AQ8IXF9 295 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 A0A1W2PPM1 405 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 C2P06681 752 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 DSC3Q14574 896 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 NT5DC1Q5TFE4 455 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 TMBIM1Q969X1 311 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 SLAMF9Q96A28 289 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 C9JVG2 144 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 NDST3O95803 873 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 FOXK1P85037 733 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 HMGN3Q15651 99 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 RAB11BQ15907 218 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 AGAP7PQ5VUJ5 663 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 AGAP6Q5VW22 663 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 ANKRD54Q6NXT1 300 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 AGAP4Q96P64 663 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 SIRPGQ9P1W8 387 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 UTS2RQ9UKP6 389 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 CDC14AQ9UNH5 594 aa12.9□□□□□ -0.34
CCDC88A-204ENST00000413716 CAPN5O15484 640 aaPredicted RBP12.9□□□□□ -0.35
CCDC88A-204ENST00000413716 SLC7A4O43246 635 aa12.9□□□□□ -0.35
CCDC88A-204ENST00000413716 FITM2Q8N6M3 262 aa12.9□□□□□ -0.35
CCDC88A-204ENST00000413716 OR51I1Q9H343 314 aa12.9□□□□□ -0.35
CCDC88A-204ENST00000413716 REEP4Q9H6H4 257 aa12.9□□□□□ -0.35
CCDC88A-204ENST00000413716 GLTPQ9NZD2 209 aa12.9□□□□□ -0.35
CCDC88A-204ENST00000413716 FBXO7Q9Y3I1 522 aa12.9□□□□□ -0.35
CCDC88A-204ENST00000413716 EEF1E1-BLOC1S5C9J1V9 151 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 FTCDNL1E5RQL4 147 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 IMPA2O14732 288 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 TLL1O43897 1013 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 SP2Q02086 613 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 RABL3Q5HYI8 236 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF695Q8IW36 515 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 ALDH16A1Q8IZ83 802 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 SPIN2AQ99865 258 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 SPIN2BQ9BPZ2 258 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 FAM170BA6NMN3 283 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 RTCAO00442 366 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 PTPRAP18433 802 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 MRPS5P82675 430 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 SMAD3P84022 425 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 COQ5Q5HYK3 327 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 PGAP1Q75T13 922 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 FAM156AQ8NDB6 213 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 OR1J4Q8NGS1 313 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 GLOD4Q9HC38 313 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 SRA1Q9HD15 236 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 DNAJC27Q9NZQ0 273 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 PTCH2Q9Y6C5 1203 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 MAGI2Q86UL8 1455 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms