RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 LRRC8BQ6P9F7 803 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 CD164L2Q6UWJ8 174 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF66Q6ZN08 573 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 BZW1Q7L1Q6 419 aaKnown RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 SERPINA11Q86U17 422 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 TMPRSS12Q86WS5 348 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 FAM131BQ86XD5 332 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 ERO1BQ86YB8 467 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 CNGA4Q8IV77 575 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 CCDC60Q8IWA6 550 aaPredicted RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 LRRC17Q8N6Y2 441 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 PNLDC1Q8NA58 520 aaKnown RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 ABHD11Q8NFV4 315 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 MCUR1Q96AQ8 359 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 P2RY11Q96G91 374 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 MSANTD3Q96H12 275 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 METTL2AQ96IZ6 378 aaKnown RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 C7orf34Q96L11 122 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 RPRD1AQ96P16 312 aaPredicted RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 CHP1Q99653 195 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 LLPHQ9BRT6 129 aaKnown RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 THAP7Q9BT49 309 aaPredicted RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 SEBOXQ9HB31 216 aaPredicted RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 SPACA1Q9HBV2 294 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 DUSP22Q9NRW4 184 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 TUBA8Q9NY65 449 aaPredicted RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 VPS54Q9P1Q0 977 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 WNT16Q9UBV4 365 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 PEF1Q9UBV8 284 aaKnown RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 ATG4BQ9Y4P1 393 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 SLCO1B1Q9Y6L6 691 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 SYNJ1O43426 1573 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 EVC2Q86UK5 1308 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 MAGI1Q96QZ7 1491 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 KIF27Q86VH2 1401 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 GABRR3A8MPY1 467 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 SUPT3HB4E1H0 165 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 SLC16A5O15375 505 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 GMNNO75496 209 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 RGS11O94810 467 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 KRT6AP02538 564 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 TMEM191BP0C7N4 346 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 SP9P0CG40 484 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 TROVE2P10155 538 aaKnown RBP eCLIP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 UNGP13051 313 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 CEACAM1P13688 526 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 ENGP17813 658 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 MAOAP21397 527 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 TUBG1P23258 451 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 DPP4P27487 766 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 DCTDP32321 178 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 PTGER4P35408 488 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 EIF2S3P41091 472 aaKnown RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 PTGFRP43088 359 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 SLC9A3P48764 834 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 COMPP49747 757 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 NUMBP49757 651 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 MAP3K7CLP57077 242 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 NLRP11P59045 1033 aaKnown RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 DRP2Q13474 957 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 CHRNA6Q15825 494 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 MAPK6Q16659 721 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 POM121L1PQ3SYA9 428 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 NKAIN2Q5VXU1 208 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 RGMBQ6NW40 437 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 C8orf74Q6P047 294 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 NIPAL3Q6P499 406 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 BCDIN3DQ7Z5W3 292 aaKnown RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 YRDCQ86U90 279 aaKnown RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 GPR137CQ8N3F9 429 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 SLC38A9Q8NBW4 561 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 ENGASEQ8NFI3 743 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 OR5D13Q8NGL4 314 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 PRSS3P2Q8NHM4 247 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 PNPT1Q8TCS8 783 aaKnown RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 OR1E3Q8WZA6 343 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 PROX1Q92786 737 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 ERGIC1Q969X5 290 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 REPS1Q96D71 796 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 GRAMD2BQ96HH9 432 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF570Q96NI8 536 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 MTERF1Q99551 399 aaKnown RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 BPIFA3Q9BQP9 254 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 RTP3Q9BQQ7 232 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 QTRT1Q9BXR0 403 aaKnown RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 TDRD1Q9BXT4 1180 aaKnown RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 TM6SF1Q9BZW5 370 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 KCNN2Q9H2S1 579 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 DCTPP1Q9H773 170 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 AUNIPQ9H7T9 357 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 MEAF6Q9HAF1 191 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 TUBG2Q9NRH3 451 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 PHPT1Q9NRX4 125 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 CYSLTR2Q9NS75 346 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 KLHL28Q9NXS3 571 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 MIS18AQ9NYP9 233 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 OR6C2Q9NZP2 312 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 PLEKHB1Q9UF11 243 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-204ENST00000399489 FZD10Q9ULW2 581 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms