RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 NXPE3Q969Y0 559 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 METTL2AQ96IZ6 378 aaKnown RBP10.69□□□□□ -0.7
CUX1-204ENST00000393824 PPP3R2Q96LZ3 170 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 FRMD6Q96NE9 622 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 KCNS3Q9BQ31 491 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 GABARAPL3Q9BY60 117 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 UBE2ZQ9H832 354 aaPredicted RBP10.69□□□□□ -0.7
CUX1-204ENST00000393824 SMURF1Q9HCE7 757 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 NLE1Q9NVX2 485 aaPredicted RBP10.69□□□□□ -0.7
CUX1-204ENST00000393824 EIF3KQ9UBQ5 218 aaKnown RBP10.69□□□□□ -0.7
CUX1-204ENST00000393824 CD207Q9UJ71 328 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 TMPRSS11EQ9UL52 423 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 MED16Q9Y2X0 877 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 POLR3HQ9Y535 204 aaPredicted RBP10.69□□□□□ -0.7
CUX1-204ENST00000393824 TNPO3Q9Y5L0 923 aaKnown RBP10.69□□□□□ -0.7
CUX1-204ENST00000393824 MYO10Q9HD67 2058 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 B4DXG7 233 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 PRRT4C9JH25 899 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 INSIG1O15503 277 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 CCNDBP1O95273 360 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 PGRP06401 933 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 CISD3P0C7P0 127 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 ADH5P11766 374 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 CHMP24386 653 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 PXNP49023 591 aaPredicted RBP10.69□□□□□ -0.7
CUX1-204ENST00000393824 TEKQ02763 1124 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 MAD2L1Q13257 205 aaPredicted RBP10.69□□□□□ -0.7
CUX1-204ENST00000393824 FAM174BQ3ZCQ3 159 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 DGKKQ5KSL6 1271 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 AFTPHQ6ULP2 937 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 ZSWIM9Q86XI8 627 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 PHACTR4Q8IZ21 702 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 YIPF7Q8N8F6 280 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 DTX3Q8N9I9 347 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 FAM181AQ8N9Y4 354 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 FAM120BQ96EK7 910 aaKnown RBP10.69□□□□□ -0.7
CUX1-204ENST00000393824 CDKN2AIPNLQ96HQ2 116 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 SEMA3CQ99985 751 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 POLR1EQ9GZS1 481 aaKnown RBP10.69□□□□□ -0.7
CUX1-204ENST00000393824 TNKS2Q9H2K2 1166 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 MAT2BQ9NZL9 334 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 MARK1Q9P0L2 795 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 ZMYM5Q9UJ78 669 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 COMMD10Q9Y6G5 202 aa10.69□□□□□ -0.7
CUX1-204ENST00000393824 A0A0B4J293 547 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 A0A1W2PQ09 198 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 FAM25EA8MYX2 175 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 MYO1GB0I1T2 1018 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 MEN1O00255 615 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 CDC7O00311 574 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 DPM1O60762 260 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 ERN1O75460 977 aaKnown RBP10.68□□□□□ -0.7
CUX1-204ENST00000393824 PTHP01270 115 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 SEMG1P04279 462 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 ASGR2P07307 311 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 CYP2A6P11509 494 aaPredicted RBP10.68□□□□□ -0.7
CUX1-204ENST00000393824 PCSK2P16519 638 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 CR2P20023 1033 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 CPN2P22792 545 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 GDI1P31150 447 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 UQCRC1P31930 480 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 PCBP2Q15366 365 aaKnown RBP eCLIP10.68□□□□□ -0.71e-6■■■■■ 33.2
CUX1-204ENST00000393824 NR6A1Q15406 480 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 TOR2AQ5JU69 321 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 SLC35F1Q5T1Q4 408 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 IL27RAQ6UWB1 636 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 TMPRSS11AQ6ZMR5 421 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 ATCAYQ86WG3 371 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 AMIGO1Q86WK6 493 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 GPSM1Q86YR5 675 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 DCAF4L2Q8NA75 395 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 ATG16L2Q8NAA4 619 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 OR52B6Q8NGF0 335 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 METTL6Q8TCB7 284 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 REPS1Q96D71 796 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 OMA1Q96E52 524 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 RNF31Q96EP0 1072 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 MYO19Q96H55 970 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 GTPBP2Q9BX10 602 aaKnown RBP10.68□□□□□ -0.7
CUX1-204ENST00000393824 UCK2Q9BZX2 261 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 FAM83DQ9H4H8 585 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 RNF121Q9H920 327 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 NUDT4Q9NZJ9 180 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 LHX3Q9UBR4 397 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 HCN2Q9UL51 889 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 SNX8Q9Y5X2 465 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 EFCAB10A6NFE3 127 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 TRIM77I1YAP6 450 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 BTN3A1O00481 513 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 BET1O15155 118 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 MBTPS2O43462 519 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 VPS26AO75436 327 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 NDUFS3O75489 264 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 OR2B3O76000 313 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 FOSL2P15408 326 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 CBLP22681 906 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 HTR6P50406 440 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 ABHD18Q0P651 414 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 IKZF1Q13422 519 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms