RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ST14Q9Y5Y6 855 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 MYH3P11055 1940 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 A0A1W2PQ45 241 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 A0A1W2PQY0 241 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 SCDO00767 359 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 INPPL1O15357 1258 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 BEST1O76090 585 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 CSF2P04141 144 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 CSN2P05814 226 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 C8orf89P0DMQ9 161 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 STOMP27105 288 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 CTSOP43234 321 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 SLC27A4Q6P1M0 643 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 ASRGL1Q7L266 308 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 OR4E2Q8NGC2 313 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 ARNTL2Q8WYA1 636 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 OR5P2Q8WZ92 322 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF304Q9HCX3 659 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 MYOCOSA0A1B0GUC4 107 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 INMT-MINDY4F8WBC2 141 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 I3L521 148 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 L7N2F9 121 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 DENRO43583 198 aaKnown RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 C1GALT1C1LP0DN25 315 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 ALPPL2P10696 532 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 GDI1P31150 447 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 NIPAL4Q0D2K0 466 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF776Q68DI1 518 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 CNKSR3Q6P9H4 555 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 CARM1Q86X55 608 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 ZSWIM9Q86XI8 627 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 CCDC54Q8NEL0 328 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 OR8J1Q8NGP2 316 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 OR51I1Q9H343 314 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 MARCH4Q9P2E8 410 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 MLXQ9UH92 298 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 PCDHGB2Q9Y5G2 931 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 DNAJC15Q9Y5T4 150 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 SCN7AQ01118 1682 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 FLRT2O43155 660 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 PCDHGA12O60330 932 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 SNNO75324 88 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 EEDO75530 441 aaKnown RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 CHRNA1P02708 482 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 UQCRC2P22695 453 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 MAPK3P27361 379 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 PDHA2P29803 388 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 MAPK14Q16539 360 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 DECR1Q16698 335 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 UPP1Q16831 310 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 SLC35F1Q5T1Q4 408 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 OGFRL1Q5TC84 451 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 ANKFN1Q8N957 763 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 CNIH3Q8TBE1 160 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 MOCOSQ96EN8 888 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 S100A16Q96FQ6 103 aaKnown RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 MGLLQ99685 303 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 C17orf62Q9BQA9 187 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 HERPUD2Q9BSE4 406 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 TXLNGYQ9BZA5 131 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 PNO1Q9NRX1 252 aaKnown RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 CMAHPQ9Y471 501 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 OARD1Q9Y530 152 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 FXYD6-FXYD2A0A087WZ82 144 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 ISPDA4D126 451 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 A8MUA0 341 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 H7BY64 318 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 SLC16A5O15375 505 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF208O43345 1280 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 IFNA21P01568 189 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 STATHP02808 62 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 MT-ND2P03891 347 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 NR2C1P13056 603 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 HSD17B1P14061 328 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 VAMP1P23763 118 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 TIA1P31483 386 aaKnown RBP eCLIP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 GKP32189 559 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 CDKL1Q00532 357 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 SOX4Q06945 474 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 SEC23BQ15437 767 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 PLA2G15Q8NCC3 412 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 RTP4Q96DX8 246 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 PRAP1Q96NZ9 151 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 FXYD6Q9H0Q3 95 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 SDHAF3Q9NRP4 125 aa11.01□□□□□ -0.65
PTPRF-203ENST00000372407 PAK1IP1Q9NWT1 392 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-203ENST00000372407 VILLO15195 856 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 COCHO43405 550 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 OR4D2P58180 307 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 IRF5Q13568 498 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 AMZ1Q400G9 498 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 ABCA11PQ4W5N1 156 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF367Q7RTV3 350 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 GLYATL1Q969I3 302 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 IGSF8Q969P0 613 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 OTUB2Q96DC9 234 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 NUDT15Q9NV35 164 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 ACSL5Q9ULC5 683 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 PCDHGB5Q9Y5G0 923 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms