RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 DPH2Q9BQC3 489 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 RIOK2Q9BVS4 552 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 SH3D21A4FU49 640 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 SCAMP1O15126 338 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 ERI3O43414 337 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 PLATP00750 562 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 CRISP1P54107 249 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 E2F1Q01094 437 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 LASP1Q14847 261 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 NTRK2Q16620 822 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 SIAH1Q8IUQ4 282 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 FAM217AQ8IXS0 508 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 OR52B6Q8NGF0 335 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 NLE1Q9NVX2 485 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 MARCH4Q9P2E8 410 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 BMP8BP34820 402 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 TAS2R43P59537 309 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 PRKCDQ05655 676 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 LRRC37A5PQ49AS3 106 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 SLC27A4Q6P1M0 643 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 BMP8AQ7Z5Y6 402 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 GALNT10Q86SR1 603 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 JAGN1Q8N5M9 183 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 PROKR2Q8NFJ6 384 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 MRGPRX2Q96LB1 330 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 GLTPD2A6NH11 291 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 H3BSH0 61 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 ATP1B2P14415 290 aaPredicted RBP18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 ZNF763Q0D2J5 394 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 TMIGD1Q6UXZ0 262 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 YIPF7Q8N8F6 280 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 CACNG6Q9BXT2 260 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 IGFLR1Q9H665 355 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 GNG8Q9UK08 70 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 UTS2RQ9UKP6 389 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 FBXL3Q9UKT7 428 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 PCDH17O14917 1159 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 SNAPC5O75971 98 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 AGXTP21549 392 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 RPL10P27635 214 aaKnown RBP18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 PPM1AP35813 382 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 CDKN2DP55273 166 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 ABRAXAS2Q15018 415 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 PRSS55Q6UWB4 352 aaPredicted RBP18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 C15orf39Q6ZRI6 1047 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 VTCN1Q7Z7D3 282 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 SPARTQ8N0X7 666 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 OSTF1Q92882 214 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 SECISBP2Q96T21 854 aaKnown RBP18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 PIP5K1AQ99755 562 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 TTTY10Q9BZA0 68 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 RIMS3Q9UJD0 308 aa18.83■□□□□ 0.61
CCDC88B-202ENST00000356786 LDB2O43679 373 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 CRYZL1O95825 349 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 DCTP40126 519 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 INHBEP58166 350 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 CDK5R2Q13319 367 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 CBFBQ13951 182 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 MS4A13Q5J8X5 152 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 ZNF648Q5T619 568 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 MMAAQ8IVH4 418 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 CASTOR1Q8WTX7 329 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 ZNF700Q9H0M5 742 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 ENPP5Q9UJA9 477 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 SH2B3Q9UQQ2 575 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 CA5AP35218 305 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 BDKRB1P46663 353 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 BTN3A2P78410 334 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 CARM1Q86X55 608 aa18.83■□□□□ 0.6
CCDC88B-202ENST00000356786 FKBP1BP68106 108 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 METTL25Q8N6Q8 603 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 C12orf42Q96LP6 360 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 GAL3ST4Q96RP7 486 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 MAGIXQ9H6Y5 334 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 MRPS30Q9NP92 439 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 EMC3Q9P0I2 261 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 FAM163BP0C2L3 166 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 PTNP21246 168 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 KCTD9Q7L273 389 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 C14orf80Q86SX3 495 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 DTWD1Q8N5C7 304 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 STUB1Q9UNE7 303 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 HEMK1Q9Y5R4 338 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 H2AFB2P0C5Z0 115 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 S100A10P60903 97 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 TRAM2Q15035 370 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 ANKRD54Q6NXT1 300 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 MGAT4CQ9UBM8 478 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 B3GALT2O43825 422 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 PRAMEF11O60813 436 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 OXTRP30559 389 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 CLCN7P51798 805 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 ODF4Q2M2E3 257 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 GTF2IRD2BQ6EKJ0 949 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 GTF2IRD2Q86UP8 949 aa18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 IMP4Q96G21 291 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 WDR6Q9NNW5 1121 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 SDR39U1Q9NRG7 319 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 FARSAQ9Y285 508 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-202ENST00000356786 LAMB4A4D0S4 1761 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms