RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DGAT2Q96PD7 388 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 TANC1Q9C0D5 1861 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 SNTNA6NMZ2 147 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 ADAMDEC1O15204 470 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 ADAM23O75077 832 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 OR2B3O76000 313 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 HSD17B1P14061 328 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 LTBRP36941 435 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 SLC19A1P41440 591 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 XKP51811 444 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 MAZP56270 477 aaKnown RBP11.07□□□□□ -0.64
VPS4A-201ENST00000254950 RGS8P57771 180 aaPredicted RBP11.07□□□□□ -0.64
VPS4A-201ENST00000254950 TAS2R38P59533 333 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 GPR18Q14330 331 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 GRM7Q14831 915 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 LASP1Q14847 261 aaKnown RBP11.07□□□□□ -0.64
VPS4A-201ENST00000254950 LPAL2Q16609 132 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 XKR7Q5GH72 579 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 PIGGQ5H8A4 983 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 PEX5LQ8IYB4 626 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 WDR48Q8TAF3 677 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 SLC37A2Q8TED4 501 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 ZFPM2Q8WW38 1151 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 COL21A1Q96P44 957 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 PCED1AQ9H1Q7 454 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 AP4B1Q9Y6B7 739 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 PRORSD1PA6NEY8 169 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 METTL12A8MUP2 240 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 UBXN7O94888 489 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 TNFAIP8O95379 198 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 ALOX5P09917 674 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 SIM2Q14190 667 aaPredicted RBP11.07□□□□□ -0.64
VPS4A-201ENST00000254950 DEFB110Q30KQ9 67 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 NDUFAF5Q5TEU4 345 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 RNF130Q86XS8 419 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 CLECL1Q8IZS7 167 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 METTL4Q8N3J2 472 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 DUSP23Q9BVJ7 150 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 SGPP1Q9BX95 441 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 MYNNQ9NPC7 610 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 DNAJB9Q9UBS3 223 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 A0A1B0GVT2 93 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 CHURC1-FNTBB4DL54 471 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 hCG_2039718K7EN88 272 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 M0QX08 132 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 NME4O00746 187 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 ZNF195O14628 629 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 OR10H3O60404 316 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 PVRP15151 417 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 GSSP48637 474 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 FNTBP49356 437 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 CLK3P49761 638 aaKnown RBP11.07□□□□□ -0.64
VPS4A-201ENST00000254950 ADRM1Q16186 407 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 EIF3MQ7L2H7 374 aaKnown RBP11.07□□□□□ -0.64
VPS4A-201ENST00000254950 ARMC8Q8IUR7 673 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 C8orf59Q8N0T1 100 aaPredicted RBP11.07□□□□□ -0.64
VPS4A-201ENST00000254950 TMEM151AQ8N4L1 468 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 CBR4Q8N4T8 237 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 MOAP1Q96BY2 351 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 COX14Q96I36 57 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 TTYH1Q9H313 450 aaPredicted RBP11.07□□□□□ -0.64
VPS4A-201ENST00000254950 IFT80Q9P2H3 777 aaPredicted RBP11.07□□□□□ -0.64
VPS4A-201ENST00000254950 COPS7AQ9UBW8 275 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 TMPRSS11EQ9UL52 423 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 PCDHB3Q9Y5E6 796 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 PCDHGA7Q9Y5G6 932 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 CLCA3PQ9Y6N3 262 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 GTPBP1O00178 669 aaKnown RBP11.06□□□□□ -0.64
VPS4A-201ENST00000254950 COQ9O75208 318 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 REEP5Q00765 189 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 ID2Q02363 134 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 VMACQ2NL98 169 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 CASP12Q6UXS9 341 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 PELI3Q8N2H9 469 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 TESCQ96BS2 214 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 RPF2Q9H7B2 306 aaKnown RBP11.06□□□□□ -0.64
VPS4A-201ENST00000254950 SLC35C2Q9NQQ7 365 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 LRIT1Q9P2V4 623 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 DOCK6Q96HP0 2047 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 A0A1W2PQF6 199 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 GPR37L1O60883 481 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 UGT2B17O75795 530 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 PIM1P11309 404 aaPredicted RBP11.06□□□□□ -0.64
VPS4A-201ENST00000254950 AGXTP21549 392 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 TACR1P25103 407 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 TAS2R41P59536 307 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 RBBP4Q09028 425 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 TUBB3Q13509 450 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 ZNF423Q2M1K9 1284 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 UGT3A2Q3SY77 523 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 ACOT4Q8N9L9 421 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 CLMPQ9H6B4 373 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 TNFRSF12AQ9NP84 129 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 KRT84Q9NSB2 600 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 MYRFQ9Y2G1 1151 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 TNFRSF11BO00300 401 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 BCHEP06276 602 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 UGT2B7P16662 529 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 UGT2B15P54855 530 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 FOLH1Q04609 750 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms