RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ARHGEF10O15013 1369 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 TDRD15B5MCY1 1934 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 DNAJA2O60884 412 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC34A2O95436 690 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 STAG3L1P0CL83 205 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 GIMD1P0DJR0 217 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PRELPP51888 382 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 QSOX2Q6ZRP7 698 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PPIL6Q8IXY8 311 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 FBXL6Q8N531 539 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 LHFPL5Q8TAF8 219 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC5A5Q92911 643 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 MICU1Q9BPX6 476 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PTDSS2Q9BVG9 487 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC19A3Q9BZV2 496 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CLPBQ9H078 707 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 AGO4Q9HCK5 861 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 COPG2Q9UBF2 871 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PDS5AQ29RF7 1337 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 POGZQ7Z3K3 1410 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 NME2P1O60361 137 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 EIF3GO75821 320 aaKnown RBP eCLIP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 H6PDO95479 791 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 RHOCP08134 193 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC2A5P22732 501 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 NDST1P52848 882 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CKS1BP61024 79 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 LCP2Q13094 533 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 TNFAIP1Q13829 316 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 NR1I3Q14994 352 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CT83Q5H943 113 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 EARS2Q5JPH6 523 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ADAMTSL2Q86TH1 951 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SERPINA9Q86WD7 417 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ZDHHC14Q8IZN3 488 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CLRN3Q8NCR9 226 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SGTBQ96EQ0 304 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SPATA33Q96N06 139 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 C1QTNF3Q9BXJ4 246 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 UGT2B28Q9BY64 529 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 MROH7Q68CQ1 1323 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ZMYM2Q9UBW7 1377 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 UMODL1Q5DID0 1318 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 FABP12A6NFH5 140 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 M0R143 59 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 LAD1O00515 517 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 VPS26AO75436 327 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 KAT7O95251 611 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CBX6O95503 412 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 JCHAINP01591 159 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 LPLP06858 475 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ALPIP09923 528 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 GSTM3P21266 225 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 MATN1P21941 496 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 GKP32189 559 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 NCALDP61601 193 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 LSM3P62310 102 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ARHGAP8P85298 464 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC25A3Q00325 362 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ITPK1Q13572 414 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 P2RY14Q15391 338 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 TEDDM1Q5T9Z0 273 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 VSTM1Q6UX27 236 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ERO1BQ86YB8 467 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 IQCKQ8N0W5 287 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 C1orf162Q8NEQ5 155 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 OR5L1Q8NGL2 311 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 XAGE3Q8WTP9 111 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 C19orf60Q96EN9 201 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 HSPA12BQ96MM6 686 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 C6orf50Q9HD87 102 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SS18L2Q9UHA2 77 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PDE10AQ9Y233 779 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 UBE2CO00762 179 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SLC16A5O15375 505 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CYB5BO43169 146 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CLEC3AO75596 197 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SCGNO76038 276 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SORBS2O94875 1100 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 UQCRBP14927 111 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 IFNGR1P15260 489 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ACO1P21399 889 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 GMPSP49915 693 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 DCDC1P59894 354 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MAXP61244 160 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SLC9B1Q4ZJI4 515 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ARL6IP4Q66PJ3 421 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 DYMQ7RTS9 669 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 OR51M1Q9H341 326 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM248Q9NWD8 314 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ARPC1BO15143 372 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 RFPL2O75678 378 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PDGFBP01127 241 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 OR4E1P0C645 316 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CASRP41180 1078 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 GCGRP47871 477 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MC2RQ01718 297 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PLAURQ03405 335 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TDRPQ86YL5 185 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 RHOT1Q8IXI2 618 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms