RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 DYRK1BQ9Y463 629 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 HELZP42694 1942 aaKnown RBP12.23□□□□□ -0.45
LINC00540-203ENST00000631321 PIPSLA2A3N6 862 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 METTL15A6NJ78 407 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 AIREO43918 545 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 FGF19O95750 216 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 IFNA14P01570 189 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 ARAFP10398 606 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 TNFRSF1BP20333 461 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 IRS1P35568 1242 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 TGFBR1P36897 503 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 NNMTP40261 264 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 EIF2DP41214 584 aaKnown RBP12.23□□□□□ -0.45
LINC00540-203ENST00000631321 CDH12P55289 794 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 WDR5P61964 334 aaKnown RBP12.23□□□□□ -0.45
LINC00540-203ENST00000631321 CDK6Q00534 326 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 EIF4HQ15056 248 aaKnown RBP12.23□□□□□ -0.45
LINC00540-203ENST00000631321 TEAD2Q15562 447 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 ERAP2Q6P179 960 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 UNC5DQ6UXZ4 953 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.23□□□□□ -0.45
LINC00540-203ENST00000631321 SYTL1Q8IYJ3 562 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 MCFD2Q8NI22 146 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 WDR48Q8TAF3 677 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 DTD2Q96FN9 168 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 COQ10AQ96MF6 247 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 COL21A1Q96P44 957 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 PIP5K1AQ99755 562 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 NIPSNAP1Q9BPW8 284 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 GPBP1L1Q9HC44 474 aaPredicted RBP12.23□□□□□ -0.45
LINC00540-203ENST00000631321 ARRDC5A6NEK1 342 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 TMEM221A6NGB7 291 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 FKTNO75072 461 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 CXCL14O95715 111 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 SOD1P00441 154 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 PIK3CBP42338 1070 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 CLK1P49759 484 aaKnown RBP12.22□□□□□ -0.45
LINC00540-203ENST00000631321 SYT16Q17RD7 645 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 DEFB115Q30KQ5 88 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF404Q494X3 552 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 HIST2H2AA3Q6FI13 130 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 NXPE4Q6UWF7 544 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 USP43Q70EL4 1123 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 IKBIPQ70UQ0 350 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 SNX29P2Q8IUI4 249 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 SLC30A8Q8IWU4 369 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 OR9A1PQ8NGU1 263 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 CIDECQ96AQ7 238 aaPredicted RBP12.22□□□□□ -0.45
LINC00540-203ENST00000631321 TCF25Q9BQ70 676 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 ITM2CQ9NQX7 267 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 ACER3Q9NUN7 267 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 TAS2R9Q9NYW1 312 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 TAF4O00268 1085 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 ATP6V1G1O75348 118 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 GADD45AP24522 165 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 PBLDP30039 288 aaPredicted RBP12.22□□□□□ -0.45
LINC00540-203ENST00000631321 OR1E2P47887 323 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 PRIM2P49643 509 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 MNX1P50219 401 aaPredicted RBP12.22□□□□□ -0.45
LINC00540-203ENST00000631321 MC1RQ01726 317 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 TAP2Q03519 686 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 C2orf80Q0P641 193 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 SLC5A12Q1EHB4 618 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 C1orf53Q5VUE5 145 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 ANGPTL8Q6UXH0 198 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 PARS2Q7L3T8 475 aaKnown RBP12.22□□□□□ -0.45
LINC00540-203ENST00000631321 ARMC8Q8IUR7 673 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 SLC5A11Q8WWX8 675 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 CRELD1Q96HD1 420 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 MTG2Q9H4K7 406 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.22□□□□□ -0.453e-16■■■■■ 32.4
LINC00540-203ENST00000631321 PCDHGA3Q9Y5H0 932 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 ENPP4Q9Y6X5 453 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 MYOFQ9NZM1 2061 aa12.22□□□□□ -0.45
LINC00540-203ENST00000631321 ISPDA4D126 451 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 KRT75O95678 551 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 TGFB1P01137 390 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 LINC00271P0C7V0 271 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 CBLP22681 906 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 GSSP48637 474 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 TAS2R50P59544 299 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 GRIN2CQ14957 1233 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 PRSS53Q2L4Q9 553 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 TOR1AIP1Q5JTV8 583 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 RNF130Q86XS8 419 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 CADM3Q8N126 398 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 VN1R2Q8NFZ6 395 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 OR52J3Q8NH60 311 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF675Q8TD23 568 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF296Q8WUU4 475 aaPredicted RBP12.21□□□□□ -0.45
LINC00540-203ENST00000631321 OTUB2Q96DC9 234 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 LINC00615Q96LM1 132 aaPredicted RBP12.21□□□□□ -0.45
LINC00540-203ENST00000631321 YME1L1Q96TA2 773 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 OR51B5Q9H339 312 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 ZBTB20Q9HC78 741 aaPredicted RBP12.21□□□□□ -0.45
LINC00540-203ENST00000631321 INIPQ9NRY2 104 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 CCDC59Q9P031 241 aaKnown RBP12.21□□□□□ -0.45
LINC00540-203ENST00000631321 ENOPH1Q9UHY7 261 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 ACSL6Q9UKU0 697 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 PNMA8BQ9ULN7 279 aaPredicted RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms