RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ZNF234Q14588 700 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 ZNF77Q15935 545 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 PDE12Q6L8Q7 609 aaKnown RBP13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 C11orf74Q86VG3 221 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 METTL4Q8N3J2 472 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 VOPP1Q96AW1 172 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 ECHDC3Q96DC8 303 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 TRPV5Q9NQA5 729 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 FBXO8Q9NRD0 319 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 ZNF639Q9UID6 485 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 ZSCAN5BA6NJL1 495 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 WASHC1A8K0Z3 465 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 LINC00271P0C7V0 271 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 ALPPL2P10696 532 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 OR1E2P47887 323 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 OR2B6P58173 313 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 ZFP69Q49AA0 526 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 ATAD3CQ5T2N8 411 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 WASH2PQ6VEQ5 465 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 PROSER1Q86XN7 944 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 OR8H2Q8N162 312 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 DEFB119Q8N690 84 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 OR5AR1Q8NGP9 310 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 OR4K3Q96R72 315 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 ARPC5LQ9BPX5 153 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 LGR4Q9BXB1 951 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 SLIRPQ9GZT3 109 aaKnown RBP13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 STOX2Q9P2F5 926 aaPredicted RBP13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 VPS29Q9UBQ0 182 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 PCDHGA10Q9Y5H3 936 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 A0A1W2PP55 124 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 CARNS1A5YM72 827 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 ANKRD28O15084 1053 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 APODP05090 189 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 EEFSECP57772 596 aaKnown RBP13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 SLBPQ14493 270 aaKnown RBP eCLIP13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 MSRB3Q8IXL7 192 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 NLGN4XQ8N0W4 816 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 SVOPQ8N4V2 548 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 HUS1BQ8NHY5 278 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 PAQR5Q9NXK6 330 aaPredicted RBP13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 RWDD3Q9Y3V2 267 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 MAP4K5Q9Y4K4 846 aa13.9□□□□□ -0.18
SHROOM1-208ENST00000617339 TRPM6Q9BX84 2022 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 PRNPP04156 253 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 POU2F1P14859 743 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 ACPPP15309 386 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 PRKCAP17252 672 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 B3GNT8Q7Z7M8 397 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 GALNT12Q8IXK2 581 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 PAPD5Q8NDF8 572 aaKnown RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 DOK4Q8TEW6 326 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 CLP1Q92989 425 aaKnown RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 RNF31Q96EP0 1072 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 PPP1R16AQ96I34 528 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 BARD1Q99728 777 aaKnown RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 KCNK6Q9Y257 313 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 M0QX08 132 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 KLK1P06870 262 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 S100A5P33763 92 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 IL12RB1P42701 662 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 RPS26P62854 115 aaKnown RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 PDGFRLQ15198 375 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 ZNF404Q494X3 552 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 USP39Q53GS9 565 aaKnown RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 GDPD3Q7L5L3 318 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 PTRH1Q86Y79 214 aaKnown RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 CBARPQ8N350 705 aaPredicted RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 FRMD1Q8N878 549 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 SPPL2AQ8TCT8 520 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 SMARCD2Q92925 531 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 MCCC1Q96RQ3 725 aaPredicted RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 TRMT61BQ9BVS5 477 aaKnown RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 SPNS1Q9H2V7 528 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 KAT8Q9H7Z6 458 aaKnown RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 SCN3BQ9NY72 215 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 MAGEL2Q9UJ55 1249 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 C3orf18Q9UK00 162 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 PRELID1Q9Y255 219 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 CCL27Q9Y4X3 112 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 KCNE2Q9Y6J6 123 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 SPTBP11277 2137 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 GLOD5A6NK44 160 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 CLIC1O00299 241 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 PRSS23O95084 383 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 APOA1P02647 267 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 TPRG1LQ5T0D9 272 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 LAIR1Q6GTX8 287 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 EID3Q8N140 333 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 CADM2Q8N3J6 435 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 RBM4BQ9BQ04 359 aaKnown RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 RBM4Q9BWF3 364 aaKnown RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 CPEB1Q9BZB8 566 aaKnown RBP13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 SYNDIG1Q9H7V2 258 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 NECTIN3Q9NQS3 549 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 HEBP1Q9NRV9 189 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 ERVK13-1Q9NX77 482 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 PLEKHM1Q9Y4G2 1056 aa13.89□□□□□ -0.19
SHROOM1-208ENST00000617339 CENPXA8MT69 81 aa13.88□□□□□ -0.19
SHROOM1-208ENST00000617339 YY2O15391 372 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms