RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 DMRTC2Q8IXT2 367 aaPredicted RBP15.32■□□□□ 0.04
CLN3-208ENST00000561505 CA13Q8N1Q1 262 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 SLC5A11Q8WWX8 675 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 ANKRD7Q92527 254 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 MAGOHBQ96A72 148 aaKnown RBP15.32■□□□□ 0.04
CLN3-208ENST00000561505 TP63Q9H3D4 680 aaPredicted RBP15.32■□□□□ 0.04
CLN3-208ENST00000561505 ZDHHC11Q9H8X9 412 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 ARL15Q9NXU5 204 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 CORO1CQ9ULV4 474 aaPredicted RBP15.32■□□□□ 0.04
CLN3-208ENST00000561505 RNF6Q9Y252 685 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 MAD1L1Q9Y6D9 718 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 TFECO14948 347 aaPredicted RBP15.31■□□□□ 0.04
CLN3-208ENST00000561505 HS6ST1O60243 411 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 HOXD4P09016 255 aaPredicted RBP15.31■□□□□ 0.04
CLN3-208ENST00000561505 CCDC137Q6PK04 289 aaKnown RBP15.31■□□□□ 0.04
CLN3-208ENST00000561505 NXPE4Q6UWF7 544 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 GPALPP1Q8IXQ4 340 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 PPIL6Q8IXY8 311 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 KLHDC8AQ8IYD2 350 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 CYP4X1Q8N118 509 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 ALKBH8Q96BT7 664 aaKnown RBP15.31■□□□□ 0.04
CLN3-208ENST00000561505 NAT9Q9BTE0 207 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 NPLQ9BXD5 320 aaPredicted RBP15.31■□□□□ 0.04
CLN3-208ENST00000561505 TRIM54Q9BYV2 358 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 KLHL31Q9H511 634 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 LZTFL1Q9NQ48 299 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 DEPPQ9NTK1 212 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 IKZF3Q9UKT9 509 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 ITPR3Q14573 2671 aa15.31■□□□□ 0.04
CLN3-208ENST00000561505 TGFBR3LH3BV60 316 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 ITGA10O75578 1167 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 CD1EP15812 388 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 HSD17B7P56937 341 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 RAB8AP61006 207 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 CDKL1Q00532 357 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 SPANXN3Q5MJ09 141 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 TEDDM1Q5T9Z0 273 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 CYP4Z2PQ8N1L4 340 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 ARMC2Q8NEN0 867 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 OR52N2Q8NGI0 321 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 GABPB2Q8TAK5 448 aaPredicted RBP15.3■□□□□ 0.04
CLN3-208ENST00000561505 VMP1Q96GC9 406 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 SEC16BQ96JE7 1060 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 KCNN3Q9UGI6 736 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 YARS2Q9Y2Z4 477 aaKnown RBP15.3■□□□□ 0.04
CLN3-208ENST00000561505 VWA7Q9Y334 891 aa15.3■□□□□ 0.04
CLN3-208ENST00000561505 FAM221AA4D161 298 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 SYNDIG1LA6NDD5 238 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 TBX6O95947 436 aaPredicted RBP15.29■□□□□ 0.04
CLN3-208ENST00000561505 IGHG3P01860 377 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 TPOP07202 933 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 NR0B1P51843 470 aaKnown RBP15.29■□□□□ 0.04
CLN3-208ENST00000561505 RUNX2Q13950 521 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 ADPRMQ3LIE5 342 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 RGS9BPQ6ZS82 235 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 THOC6Q86W42 341 aaKnown RBP15.29■□□□□ 0.04
CLN3-208ENST00000561505 GPATCH11Q8N954 259 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 RND1Q92730 232 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 PBKQ96KB5 322 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 QRFPRQ96P65 431 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 AIF1LQ9BQI0 150 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 CXXC4Q9H2H0 198 aa15.29■□□□□ 0.04
CLN3-208ENST00000561505 PHF3Q92576 2039 aaKnown RBP15.29■□□□□ 0.04
CLN3-208ENST00000561505 TRBV11-1A0A0K0K1C0 115 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 A0A1B0GVC2 190 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 PSMD12O00232 456 aaPredicted RBP15.28■□□□□ 0.04
CLN3-208ENST00000561505 PRKNO60260 465 aaPredicted RBP15.28■□□□□ 0.04
CLN3-208ENST00000561505 GLSO94925 669 aaPredicted RBP15.28■□□□□ 0.04
CLN3-208ENST00000561505 TUBB4AP04350 444 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 GSTM2P28161 218 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 RFC3P40938 356 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 FNTAP49354 379 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 SSR4P51571 173 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 FRG1Q14331 258 aaKnown RBP15.28■□□□□ 0.04
CLN3-208ENST00000561505 HYAL4Q2M3T9 481 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 MSS51Q4VC12 460 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 HECTD2Q5U5R9 776 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 CEP128Q6ZU80 1094 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 ACAD11Q709F0 780 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 IGDCC3Q8IVU1 814 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 RPRMLQ8N4K4 120 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 PSD4Q8NDX1 1056 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 GAL3ST3Q96A11 431 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 CERS2Q96G23 380 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 MS4A14Q96JA4 679 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 PDLIM2Q96JY6 352 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 NT5DC2Q9H857 520 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 SLC24A3Q9HC58 644 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 KCNJ16Q9NPI9 418 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 TIMMDC1Q9NPL8 285 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 KCNE2Q9Y6J6 123 aa15.28■□□□□ 0.04
CLN3-208ENST00000561505 INTS1Q8N201 2190 aaKnown RBP15.27■□□□□ 0.04
CLN3-208ENST00000561505 OR14I1A6ND48 311 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 LRIT2A6NDA9 550 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 A8MUA0 341 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 CYR61O00622 381 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 ZFAND5O76080 213 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 MYO1DO94832 1006 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 SERPIND1P05546 499 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 IVDP26440 423 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms