RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	OR2L5	Q8NG80	312 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	OR5T3	Q8NGG3	340 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	CREB3L4	Q8TEY5	395 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	ANKRD49	Q8WVL7	239 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	RELT	Q969Z4	430 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	MOCOS	Q96EN8	888 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	MAGED4	Q96JG8	741 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	SERINC2	Q96SA4	455 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	MCMBP	Q9BTE3	642 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	NUDT4	Q9NZJ9	180 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	ADGRE2	Q9UHX3	823 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	NOTCH2	Q04721	2471 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	TCRBV16S1A1N1	A0A5B0	115 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	NCF1B	A6NI72	391 aa	Predicted RBP	13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	NCF1C	A8MVU1	366 aa	Predicted RBP	13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	ERI3	O43414	337 aa	Known RBP	13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	UNC5C	O95185	931 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	NCF1	P14598	390 aa	Predicted RBP	13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	PHB	P35232	272 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	KCNC1	P48547	511 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	CYB561	P49447	251 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	TDGF1P3	P51864	188 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	MTTP	P55157	894 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	RAB38	P57729	211 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	OLR1	P78380	273 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	BTN3A2	P78410	334 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	SRSF11	Q05519	484 aa	Known RBP	13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	C2orf54	Q08AI8	447 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	TBCC	Q15814	346 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	XKR6	Q5GH73	641 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	POGLUT1	Q8NBL1	392 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	MDS2	Q8NDY4	140 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	ELP5	Q8TE02	316 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	THAP3	Q8WTV1	239 aa	Predicted RBP	13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	TSLP	Q969D9	159 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	WDR34	Q96EX3	536 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	KCNC2	Q96PR1	638 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	TAAR6	Q96RI8	345 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	DEFB126	Q9BYW3	111 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	REXO4	Q9GZR2	422 aa	Known RBP	13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	RHBG	Q9H310	441 aa		13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	MTO1	Q9Y2Z2	717 aa	Known RBP	13.21	□□□□□ -0.29
TPM1-223	ENST00000560445	IGKV3D-11	A0A0A0MRZ8	115 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	LRIT2	A6NDA9	550 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	PHGDH	O43175	533 aa	Known RBP	13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	F10	P00742	488 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	SMIM10L1	P0DMW3	83 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	CD1D	P15813	335 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	MAGEA4	P43358	317 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	CLCN2	P51788	898 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	EFNA3	P52797	238 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	PHEX	P78562	749 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	MRPS25	P82663	173 aa	Known RBP	13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	ALDH6A1	Q02252	535 aa	Known RBP	13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	IRF8	Q02556	426 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	SLC13A2	Q13183	592 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	ZRSR2	Q15696	482 aa	Known RBP	13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	FAM83E	Q2M2I3	478 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	TMEM35A	Q53FP2	167 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	C8orf74	Q6P047	294 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	KLC3	Q6P597	504 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	TAOK1	Q7L7X3	1001 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	CA13	Q8N1Q1	262 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	PPM1N	Q8N819	430 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	B3GNT7	Q8NFL0	401 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	MS4A6E	Q96DS6	147 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	VMP1	Q96GC9	406 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	SCMH1	Q96GD3	660 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	SMIM10	Q96HG1	83 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	SPNS1	Q9H2V7	528 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	PRTFDC1	Q9NRG1	225 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	RYDEN	Q9NUL5	291 aa	Known RBP	13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	GRHL1	Q9NZI5	618 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	LRFN1	Q9P244	771 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	OPTC	Q9UBM4	332 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	MTRF1L	Q9UGC7	380 aa	Known RBP	13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	IKZF3	Q9UKT9	509 aa		13.2	□□□□□ -0.3
TPM1-223	ENST00000560445	KLF13	Q9Y2Y9	288 aa	Predicted RBP	13.2	□□□□□ -0.3
TPM1-223	ENST00000560445		A0A087X1B8	175 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	TRGV8	A0A0C4DH27	118 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	FANCG	O15287	622 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	DYRK3	O43781	588 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	KERA	O60938	352 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	SLC25A12	O75746	678 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	WISP3	O95389	354 aa	Predicted RBP	13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	SP1	P08047	785 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	LTA4H	P09960	611 aa	Known RBP	13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	TRHR	P34981	398 aa	Predicted RBP	13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	CD96	P40200	585 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	PIK3CG	P48736	1102 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	HSPA7	P48741	367 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	PGGT1B	P53609	377 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	HYAL2	Q12891	473 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	SERTAD2	Q14140	314 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	NAA30	Q147X3	362 aa	Predicted RBP	13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	ADPRM	Q3LIE5	342 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	FCRLB	Q6BAA4	426 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	SLC25A25	Q6KCM7	469 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	CHSY3	Q70JA7	882 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	ZNF572	Q7Z3I7	529 aa	Predicted RBP	13.19	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 23 ms