RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CPEB2Q7Z5Q1 589 aaKnown RBP12.92□□□□□ -0.34
SHMT2-219ENST00000555563 ANKRD37Q7Z713 158 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 KBTBD2Q8IY47 623 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 CA13Q8N1Q1 262 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 AMER2Q8N7J2 671 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 OR2L5Q8NG80 312 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 OR7G3Q8NG95 312 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 ZNF473Q8WTR7 871 aaKnown RBP12.92□□□□□ -0.34
SHMT2-219ENST00000555563 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.92□□□□□ -0.34
SHMT2-219ENST00000555563 UBE2E3Q969T4 207 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 FAR2Q96K12 515 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 IMMP1LQ96LU5 166 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 F2RL3Q96RI0 385 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 MS4A8Q9BY19 250 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 MFRPQ9BY79 579 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 CLK4Q9HAZ1 481 aaKnown RBP12.92□□□□□ -0.34
SHMT2-219ENST00000555563 ZBTB20Q9HC78 741 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-219ENST00000555563 PRM3Q9NNZ6 103 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 LUZP4Q9P127 313 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 TMCO1Q9UM00 188 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 DOCK10Q96BY6 2186 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 A0A088AWK7 358 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 A8MT66 165 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 FAM227AF5H4B4 570 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 PSMD12O00232 456 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-219ENST00000555563 SH3BGRLO75368 114 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 SORBS2O94875 1100 aaKnown RBP12.91□□□□□ -0.34
SHMT2-219ENST00000555563 SLU7O95391 586 aaKnown RBP12.91□□□□□ -0.34
SHMT2-219ENST00000555563 SERPINA7P05543 415 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 RPS17P08708 135 aaKnown RBP12.91□□□□□ -0.34
SHMT2-219ENST00000555563 ZNF10P21506 573 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-219ENST00000555563 SERPINB1P30740 379 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 SLCO1A2P46721 670 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 DDX39BQ13838 428 aaKnown RBP12.91□□□□□ -0.34
SHMT2-219ENST00000555563 RUNX2Q13950 521 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 NSDHLQ15738 373 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 AGAP7PQ5VUJ5 663 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 JMJD6Q6NYC1 403 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-219ENST00000555563 ABHD17CQ6PCB6 329 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 IGFL3Q6UXB1 125 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 RNF175Q8N4F7 328 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 TMEM151AQ8N4L1 468 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 OR52B6Q8NGF0 335 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 HUS1BQ8NHY5 278 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 BRIX1Q8TDN6 353 aaKnown RBP12.91□□□□□ -0.34
SHMT2-219ENST00000555563 TM9SF4Q92544 642 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 NSUN5Q96P11 429 aaKnown RBP12.91□□□□□ -0.34
SHMT2-219ENST00000555563 AGAP4Q96P64 663 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 WDR77Q9BQA1 342 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-219ENST00000555563 CCDC77Q9BR77 488 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 TUBB6Q9BUF5 446 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 IPPKQ9H8X2 491 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 COPS7BQ9H9Q2 264 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-219ENST00000555563 TMEM216Q9P0N5 145 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 PCTPQ9UKL6 214 aa12.91□□□□□ -0.34
SHMT2-219ENST00000555563 SMIM23A6NLE4 172 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 FOXO6A8MYZ6 492 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 OR7A17O14581 309 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 B3GALT2O43825 422 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 UGDHO60701 494 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 TGFB1P01137 390 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 PYGBP11216 843 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 MAOAP21397 527 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 ARL1P40616 181 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-219ENST00000555563 MTTPP55157 894 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 MLLT10P55197 1068 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 RAB38P57729 211 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 BTG2P78543 158 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 TGM3Q08188 693 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 SFT2D3Q587I9 215 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 LIPJQ5W064 366 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 PAPD4Q6PIY7 484 aaKnown RBP12.9□□□□□ -0.34
SHMT2-219ENST00000555563 ZNF793Q6ZN11 406 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 QSOX2Q6ZRP7 698 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 RIPOR1Q6ZS17 1223 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 UBE3DQ7Z6J8 389 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 LCA5Q86VQ0 697 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 SIRT6Q8N6T7 355 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 FAM47BQ8NA70 645 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 Q8NA96 180 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 PLPP5Q8NEB5 264 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 ACMSDQ8TDX5 336 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 EPS8L3Q8TE67 593 aaKnown RBP12.9□□□□□ -0.34
SHMT2-219ENST00000555563 PSMF1Q92530 271 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 PNPLA2Q96AD5 504 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 KCNC2Q96PR1 638 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 CDK15Q96Q40 435 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 SERINC2Q96SA4 455 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 MTERF1Q99551 399 aaKnown RBP12.9□□□□□ -0.34
SHMT2-219ENST00000555563 NPLQ9BXD5 320 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-219ENST00000555563 NOL11Q9H8H0 719 aaKnown RBP12.9□□□□□ -0.34
SHMT2-219ENST00000555563 ZBTB26Q9HCK0 441 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 DMRT3Q9NQL9 472 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.9□□□□□ -0.34
SHMT2-219ENST00000555563 RNF11Q9Y3C5 154 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 PCDHGA11Q9Y5H2 935 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 CSAG2Q9Y5P2 127 aa12.9□□□□□ -0.34
SHMT2-219ENST00000555563 V9GYY5 206 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-219ENST00000555563 IGKV3D-11A0A0A0MRZ8 115 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 A0A1W2PPM1 405 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms