RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 CFAP36Q96G28 342 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 RUNDC3BQ96NL0 473 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 DMRTA2Q96SC8 542 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 NAPGQ99747 312 aaPredicted RBP10.61□□□□□ -0.71
VPS28-214ENST00000531032 VKORC1Q9BQB6 163 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 DEFB126Q9BYW3 111 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 NECTIN3Q9NQS3 549 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 ZFATQ9P243 1243 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 PPIEQ9UNP9 301 aaKnown RBP10.61□□□□□ -0.71
VPS28-214ENST00000531032 CHMP2BQ9UQN3 213 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 SLC22A14Q9Y267 594 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 KLF13Q9Y2Y9 288 aaPredicted RBP10.61□□□□□ -0.71
VPS28-214ENST00000531032 MMACHCQ9Y4U1 282 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 PSAT1Q9Y617 370 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 TEX264Q9Y6I9 313 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 CELSR1Q9NYQ6 3014 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 NPEPPSL1A6NEC2 478 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 USP27XA6NNY8 438 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 CDC7O00311 574 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 PRRG2O14669 202 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 ZNHIT1O43257 154 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 PTGER1P34995 402 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 PAFAH1B1P43034 410 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 KIR3DL1P43629 444 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 HNMTP50135 292 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 STXBP1P61764 594 aaKnown RBP10.6□□□□□ -0.71
VPS28-214ENST00000531032 RBBP5Q15291 538 aaKnown RBP10.6□□□□□ -0.71
VPS28-214ENST00000531032 TOR1AIP1Q5JTV8 583 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 HP1BP3Q5SSJ5 553 aaPredicted RBP10.6□□□□□ -0.71
VPS28-214ENST00000531032 ZC3HC1Q86WB0 502 aaKnown RBP10.6□□□□□ -0.71
VPS28-214ENST00000531032 KLHL7Q8IXQ5 586 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.6□□□□□ -0.716e-7■■■■■ 139.2
VPS28-214ENST00000531032 KLHDC8AQ8IYD2 350 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 EID3Q8N140 333 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 NKAPQ8N5F7 415 aaKnown RBP10.6□□□□□ -0.71
VPS28-214ENST00000531032 B3GNT7Q8NFL0 401 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 GAL3ST3Q96A11 431 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 PWWP2AQ96N64 755 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 RHBGQ9H310 441 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 OARD1Q9Y530 152 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 CLDN16Q9Y5I7 305 aa10.6□□□□□ -0.71
VPS28-214ENST00000531032 F8P00451 2351 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 POLQO75417 2590 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 TRBV11-1A0A0K0K1C0 115 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 A8MUA0 341 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 KLRC4-KLRK1H3BQV0 150 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 MYO1DO94832 1006 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 TFEBP19484 476 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 GSTM2P28161 218 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 SSTR2P30874 369 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 HNRNPH1P31943 449 aaKnown RBP10.59□□□□□ -0.71
VPS28-214ENST00000531032 SLC6A12P48065 614 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 MEOX1P50221 254 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 CLCN2P51788 898 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 GPR143P51810 404 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 BTN3A2P78410 334 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 MGAT5Q09328 741 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 C3P1Q6ZMU1 363 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 SLCO4C1Q6ZQN7 724 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 SYDE1Q6ZW31 735 aaPredicted RBP10.59□□□□□ -0.71
VPS28-214ENST00000531032 ADAMTSL2Q86TH1 951 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 SULF2Q8IWU5 870 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 ZFP62Q8NB50 900 aaPredicted RBP10.59□□□□□ -0.71
VPS28-214ENST00000531032 TTLQ8NG68 377 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 C16orf52Q8NHV5 167 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 FAM57AQ8TBR7 257 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 MS4A6EQ96DS6 147 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 SEC16BQ96JE7 1060 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 PDLIM2Q96JY6 352 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 SPOCK3Q9BQ16 436 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 TREX2Q9BQ50 279 aaPredicted RBP10.59□□□□□ -0.71
VPS28-214ENST00000531032 NPLQ9BXD5 320 aaPredicted RBP10.59□□□□□ -0.71
VPS28-214ENST00000531032 ZNF223Q9UK11 482 aaPredicted RBP10.59□□□□□ -0.71
VPS28-214ENST00000531032 SAR1BQ9Y6B6 198 aa10.59□□□□□ -0.71
VPS28-214ENST00000531032 ANKRD17O75179 2603 aaKnown RBP10.58□□□□□ -0.72
VPS28-214ENST00000531032 CCDC168Q8NDH2 2452 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 A0A1B0GTH9 108 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 FAM95CA0A1B0GW59 222 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 LRIT2A6NDA9 550 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 TGFBR3LH3BV60 316 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 TFECO14948 347 aaPredicted RBP10.58□□□□□ -0.72
VPS28-214ENST00000531032 TP73O15350 636 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 PEX1O43933 1283 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 ITGA10O75578 1167 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 WDR47O94967 919 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 SEC31AO94979 1220 aaKnown RBP10.58□□□□□ -0.72
VPS28-214ENST00000531032 C1GALT1C1LP0DN25 315 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 GNAZP19086 355 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 SAT1P21673 171 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 PTGS2P35354 604 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 ARL4CP56559 192 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 HSD17B7P56937 341 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 RAB38P57729 211 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 TAS2R39P59534 338 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 DR1Q01658 176 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 RUNX2Q13950 521 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 ZNF460Q14592 562 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 TSNQ15631 228 aaKnown RBP10.58□□□□□ -0.72
VPS28-214ENST00000531032 ADPRMQ3LIE5 342 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 CMPK2Q5EBM0 449 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms