RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.95□□□□□ -0.5
PTPRF-214ENST00000496043 LGI4Q8N135 537 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 FBXO25Q8TCJ0 367 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 FBF1Q8TES7 1133 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 RELTQ969Z4 430 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 ESAMQ96AP7 390 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 MS4A6EQ96DS6 147 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 PTCD3Q96EY7 689 aaKnown RBP11.95□□□□□ -0.5
PTPRF-214ENST00000496043 NPAS2Q99743 824 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 TMEM79Q9BSE2 394 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 AICDAQ9GZX7 198 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 NMRAL1Q9HBL8 299 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 NECTIN3Q9NQS3 549 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 ANKRD10Q9NXR5 420 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 SEC14L3Q9UDX4 400 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 ZNF490Q9ULM2 529 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-214ENST00000496043 RNF112Q9ULX5 631 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 MMACHCQ9Y4U1 282 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 HIVEP3Q5T1R4 2406 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 SPTBN1Q01082 2364 aaKnown RBP11.94□□□□□ -0.5
PTPRF-214ENST00000496043 TCRBV16S1A1N1A0A5B0 115 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 SAGE2PA6NJ88 616 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 GABRR3A8MPY1 467 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 ERI3O43414 337 aaKnown RBP11.94□□□□□ -0.5
PTPRF-214ENST00000496043 B3GALT2O43825 422 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 MAN1A2O60476 641 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 CCNT2O60583 730 aaKnown RBP11.94□□□□□ -0.5
PTPRF-214ENST00000496043 FAM155BO75949 473 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 UNC5CO95185 931 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 MLYCDO95822 493 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 C1QAP02745 245 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 MST1P26927 711 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 COL8A1P27658 744 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 EEF1DP29692 281 aaKnown RBP11.94□□□□□ -0.5
PTPRF-214ENST00000496043 HNRNPH1P31943 449 aaKnown RBP11.94□□□□□ -0.5
PTPRF-214ENST00000496043 STX2P32856 288 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 KCNC1P48547 511 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 PLA2G16P53816 162 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 RBPJQ06330 500 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 TGM3Q08188 693 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 NAB1Q13506 487 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 DOC2AQ14183 400 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 TRADDQ15628 312 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 PDK4Q16654 411 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.94□□□□□ -0.56e-8■□□□□ 10.3
PTPRF-214ENST00000496043 FBXO48Q5FWF7 155 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 PAGE2BQ5JRK9 111 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 SLC25A25Q6KCM7 469 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 ZNF572Q7Z3I7 529 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-214ENST00000496043 FJX1Q86VR8 437 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 C17orf53Q8N3J3 647 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-214ENST00000496043 TMEM178AQ8NBL3 297 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 MDS2Q8NDY4 140 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 NFAM1Q8NET5 270 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-214ENST00000496043 OR2L5Q8NG80 312 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 SIGLEC12Q96PQ1 595 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 EFCAB11Q9BUY7 163 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 DEFB126Q9BYW3 111 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 CD244Q9BZW8 370 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 REXO4Q9GZR2 422 aaKnown RBP11.94□□□□□ -0.5
PTPRF-214ENST00000496043 KLHL1Q9NR64 748 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 LRFN1Q9P244 771 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 SCN2AQ99250 2005 aa11.94□□□□□ -0.5
PTPRF-214ENST00000496043 SPTAN1Q13813 2472 aaKnown RBP11.94□□□□□ -0.5
PTPRF-214ENST00000496043 IGKV3D-11A0A0A0MRZ8 115 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 A0A0G2JN53 185 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 C4orf51C9J302 202 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 SP1P08047 785 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 TFEBP19484 476 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 CASP2P42575 452 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 ST13P50502 369 aaKnown RBP11.93□□□□□ -0.5
PTPRF-214ENST00000496043 HSD17B7P56937 341 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 RAB38P57729 211 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 MLF1P58340 268 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 IRF8Q02556 426 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 GUCY2DQ02846 1103 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 CKAP4Q07065 602 aaKnown RBP11.93□□□□□ -0.5
PTPRF-214ENST00000496043 RCN2Q14257 317 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 ZRSR2Q15696 482 aaKnown RBP11.93□□□□□ -0.5
PTPRF-214ENST00000496043 TBCCQ15814 346 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 ADPRMQ3LIE5 342 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 KRTCAP3Q53RY4 240 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 C1QL3Q5VWW1 255 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 TRIM40Q6P9F5 258 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 ZDHHC24Q6UX98 284 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 TBC1D1Q86TI0 1168 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-214ENST00000496043 ISCA2Q86U28 154 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 KIF2BQ8N4N8 673 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 FAM98AQ8NCA5 519 aaKnown RBP11.93□□□□□ -0.5
PTPRF-214ENST00000496043 PDPRQ8NCN5 879 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 SRFBP1Q8NEF9 429 aaKnown RBP11.93□□□□□ -0.5
PTPRF-214ENST00000496043 ADAMTS18Q8TE60 1221 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 WDR34Q96EX3 536 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 SCMH1Q96GD3 660 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 QRFPRQ96P65 431 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 SERINC2Q96SA4 455 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 ROGDIQ9GZN7 287 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 ALG9Q9H6U8 611 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 PRM3Q9NNZ6 103 aa11.93□□□□□ -0.5
PTPRF-214ENST00000496043 PRTFDC1Q9NRG1 225 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms