RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 SRFBP1Q8NEF9 429 aaKnown RBP15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 OR4F6Q8NGB9 312 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 WDR20Q8TBZ3 569 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TRPC4APQ8TEL6 797 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 QRFPRQ96P65 431 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 KCNC2Q96PR1 638 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MTERF1Q99551 399 aaKnown RBP15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 NPLQ9BXD5 320 aaPredicted RBP15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 C12orf65Q9H3J6 166 aaKnown RBP15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 COPS7BQ9H9Q2 264 aaPredicted RBP15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MID2Q9UJV3 735 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 NUP210LQ5VU65 1888 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SCN3AQ9NY46 2000 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 NBEAQ8NFP9 2946 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 EIF4E1BA6NMX2 242 aaKnown RBP15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 B3GALT2O43825 422 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ALOX12BO75342 701 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SH3BGRLO75368 114 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MLYCDO95822 493 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 FHP07954 510 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RNH1P13489 461 aaKnown RBP15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 JAK1P23458 1154 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CCL11P51671 97 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 EFNA3P52797 238 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MTTPP55157 894 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 DCAF10Q5QP82 559 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 KHDRBS2Q5VWX1 349 aaKnown RBP15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TTC19Q6DKK2 380 aaPredicted RBP15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 LETMD1Q6P1Q0 360 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 IQCKQ8N0W5 287 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 OR11G2Q8NGC1 345 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 METTL21AQ8WXB1 218 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TBC1D20Q96BZ9 403 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 C8orf44Q96CB5 159 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ZIM3Q96PE6 472 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SERINC2Q96SA4 455 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SMC6Q96SB8 1091 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MESP1Q9BRJ9 268 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CENPKQ9BS16 269 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SEMA4CQ9C0C4 833 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ROGDIQ9GZN7 287 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 OR51B5Q9H339 312 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RRAGDQ9NQL2 400 aaPredicted RBP15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 LANCL2Q9NS86 450 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TRPS1Q9UHF7 1281 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 STK38LQ9Y2H1 464 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PLLPQ9Y342 182 aa15.36■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 A0A1B0GTL3 188 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MAGEB17A8MXT2 336 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PSMD12O00232 456 aaPredicted RBP15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 FOXE1O00358 373 aaPredicted RBP15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PPP6CO00743 305 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RGS16O15492 202 aaPredicted RBP15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CDC123O75794 336 aaPredicted RBP15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 C8orf89P0DMQ9 161 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CPA3P15088 417 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CERS1P27544 350 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RAP1GDS1P52306 607 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 DNAJB13P59910 316 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RPS13P62277 151 aaKnown RBP15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 IFT88Q13099 833 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 AIMP2Q13155 320 aaKnown RBP15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RUNX2Q13950 521 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CEP85LQ5SZL2 805 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 C10orf62Q5T681 223 aaPredicted RBP15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 DEPDC1Q5TB30 811 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 FRG2Q64ET8 278 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TMEM205Q6UW68 189 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 LRIG3Q6UXM1 1119 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 UBE3DQ7Z6J8 389 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MYRIPQ8NFW9 859 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 C9orf43Q8TAL5 461 aaPredicted RBP15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ABHD17AQ96GS6 310 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 FRG2BQ96QU4 278 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ZNF382Q96SR6 550 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TBCDQ9BTW9 1192 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 GSTO2Q9H4Y5 243 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PRDM7Q9NQW5 492 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PSD3Q9NYI0 1048 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SENP1Q9P0U3 644 aa15.35■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 LOC102723996A0A087X1L8 192 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQ72 361 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MASP2O00187 686 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SAP18O00422 153 aaKnown RBP15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SPAG7O75391 227 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CEACAM4O75871 244 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 OR4F21O95013 312 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 HPP00738 406 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 COX6A1P12074 109 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PTX3P26022 381 aaPredicted RBP15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SSR2P43308 183 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 NEK2P51955 445 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RAB38P57729 211 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 NAA20P61599 178 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RHAGQ02094 409 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 EEF1A2Q05639 463 aaKnown RBP15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 LCP2Q13094 533 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 BEND6Q5SZJ8 279 aaPredicted RBP15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 LIPMQ5VYY2 423 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ZNF793Q6ZN11 406 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms