RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 SNRPAP09012 282 aaKnown RBP11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 RBP1P09455 135 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 MYBL2P10244 700 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 COL6A2P12110 1019 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 JAK1P23458 1154 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 SOX11P35716 441 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 PLA2G16P53816 162 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 ACTN3Q08043 901 aaPredicted RBP11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 SLC29A2Q14542 456 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 BTBD16Q32M84 506 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 SFT2D3Q587I9 215 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 B3GNTL1Q67FW5 361 aaPredicted RBP11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 PLAG1Q6DJT9 500 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 MED27Q6P2C8 311 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 ABHD17CQ6PCB6 329 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 ADGRD1Q6QNK2 874 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 CUZD1Q86UP6 607 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 GSPT2Q8IYD1 628 aaKnown RBP11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 LAS2Q8IYD9 372 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 CISD2Q8N5K1 135 aaKnown RBP11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 CATSPER1Q8NEC5 780 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 OR7G3Q8NG95 312 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 PPP4R1Q8TF05 950 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 ZNF473Q8WTR7 871 aaKnown RBP11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 UBE2E3Q969T4 207 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 C19orf60Q96EN9 201 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 SCYL1Q96KG9 808 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 PTCHD1Q96NR3 888 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 ILKAPQ9H0C8 392 aaPredicted RBP11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 EPB41L4BQ9H329 900 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 EPS8L2Q9H6S3 715 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 PRDM7Q9NQW5 492 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 PLA2G3Q9NZ20 509 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 ANGPTL3Q9Y5C1 460 aa11.98□□□□□ -0.49
PRPF40A-203ENST00000448428 CNTRLQ7Z7A1 2325 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 PSMD12O00232 456 aaPredicted RBP11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 E2F3O00716 465 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 SH3BGRLO75368 114 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 TGFB1P01137 390 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 PCNAP12004 261 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 MAOAP21397 527 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 HPDP32754 393 aaPredicted RBP11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 OR4D2P58180 307 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 AP2B1P63010 937 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 GTF2H2Q13888 395 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 TSNAXIP1Q2TAA8 658 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 LGSNQ5TDP6 509 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 GRHL2Q6ISB3 625 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 GTF2H2CQ6P1K8 395 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 TRIM40Q6P9F5 258 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 PAPD4Q6PIY7 484 aaKnown RBP11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 TIFABQ6ZNK6 161 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 QSOX2Q6ZRP7 698 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 UBE3DQ7Z6J8 389 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 IQCKQ8N0W5 287 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 RNF175Q8N4F7 328 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 TMEM151AQ8N4L1 468 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 EFCAB3Q8N7B9 438 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 EIF1ADQ8N9N8 165 aaKnown RBP11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 SNRNP40Q96DI7 357 aaKnown RBP11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 SERINC2Q96SA4 455 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 NPLQ9BXD5 320 aaPredicted RBP11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 MS4A8Q9BY19 250 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 IPPKQ9H8X2 491 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 NECTIN3Q9NQS3 549 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 PRDM9Q9NQV7 894 aa11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 TNPO3Q9Y5L0 923 aaKnown RBP11.97□□□□□ -0.49
PRPF40A-203ENST00000448428 A0A088AWK7 358 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 IGKV3D-11A0A0A0MRZ8 115 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 A8MUI8 341 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 B3GALT2O43825 422 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 SBK3P0C264 359 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 ZNF10P21506 573 aaPredicted RBP11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 CERS1P27544 350 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 MTTPP55157 894 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 RAB38P57729 211 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 TGM3Q08188 693 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 EXT1Q16394 746 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 TEX35Q5T0J7 233 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 LIPJQ5W064 366 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 H3F3CQ6NXT2 135 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 METTL2BQ6P1Q9 378 aaKnown RBP11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 GOLGA7Q7Z5G4 137 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 ATCAYQ86WG3 371 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 CYP4X1Q8N118 509 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 PTGR2Q8N8N7 351 aaPredicted RBP11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 TMEM52Q8NDY8 209 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 HUS1BQ8NHY5 278 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 M1APQ8TC57 530 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 HAS2Q92819 552 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 PHF21BQ96EK2 531 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 CNDP1Q96KN2 507 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 MAGEB10Q96LZ2 347 aaPredicted RBP11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 LPAR4Q99677 370 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 MRPL57Q9BQC6 102 aaKnown RBP11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 ACTR8Q9H981 624 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 KCNK13Q9HB14 408 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 ASF1BQ9NVP2 202 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 STMN3Q9NZ72 180 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 XPR1Q9UBH6 696 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms