RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 OR2A25A4D2G3 310 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 TMEM221A6NGB7 291 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 TMEM88BA6NKF7 163 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 TTC34A8MYJ7 566 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 SCAMP1O15126 338 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 PPP2R1BP30154 601 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 TIA1P31483 386 aaKnown RBP eCLIP11.4□□□□□ -0.58
MSH6-204ENST00000445503 SLC19A1P41440 591 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 DSTNP60981 165 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 HBA1P69905 142 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 SMU1Q2TAY7 513 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.4□□□□□ -0.58
MSH6-204ENST00000445503 LIPJQ5W064 366 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.4□□□□□ -0.581e-6■■■■■ 51
MSH6-204ENST00000445503 MEX3DQ86XN8 651 aaKnown RBP11.4□□□□□ -0.58
MSH6-204ENST00000445503 LYSMD2Q8IV50 215 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 METTL4Q8N3J2 472 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 VMP1Q96GC9 406 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 ZNF300Q96RE9 604 aaPredicted RBP11.4□□□□□ -0.58
MSH6-204ENST00000445503 BBS4Q96RK4 519 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 REEP4Q9H6H4 257 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 EQTNQ9NQ60 294 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 NDRG4Q9ULP0 352 aaKnown RBP11.4□□□□□ -0.58
MSH6-204ENST00000445503 LYVE1Q9Y5Y7 322 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 SPIN1Q9Y657 262 aaPredicted RBP11.4□□□□□ -0.58
MSH6-204ENST00000445503 TMEM202A6NGA9 273 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 CCRL2O00421 344 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 CDK1P06493 297 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 LHCGRP22888 699 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 PDHA2P29803 388 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 RFX3P48380 749 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 RGS6P49758 472 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 CTSCP53634 463 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 RAB25P57735 213 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 CD83Q01151 205 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 ZNF45Q02386 682 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 PTSQ03393 145 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 GAB1Q13480 694 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 MRPL58Q14197 206 aaKnown RBP11.4□□□□□ -0.58
MSH6-204ENST00000445503 ZNF181Q2M3W8 571 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 LAIR2Q6ISS4 152 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 DNAJC22Q8N4W6 341 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 C7orf57Q8NEG2 295 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 PIK3R3Q92569 461 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 YIPF6Q96EC8 236 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 HDHD2Q9H0R4 259 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 TP63Q9H3D4 680 aaPredicted RBP11.4□□□□□ -0.58
MSH6-204ENST00000445503 ZNF334Q9HCZ1 680 aaPredicted RBP11.4□□□□□ -0.58
MSH6-204ENST00000445503 ASAH2Q9NR71 780 aa11.4□□□□□ -0.58
MSH6-204ENST00000445503 NME6O75414 186 aaPredicted RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 LEFTY1O75610 366 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 ALPPL2P10696 532 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 PTGER1P34995 402 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 TIE1P35590 1138 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 ZNF763Q0D2J5 394 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 MRPL28Q13084 256 aaKnown RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 FBXO43Q4G163 708 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 SPIN4Q56A73 249 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 ZNF783Q6ZMS7 281 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 COMMD6Q7Z4G1 85 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 METTL3Q86U44 580 aaKnown RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 TMEM25Q86YD3 366 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 CHCHD4Q8N4Q1 142 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 NEIL2Q969S2 332 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 TTLL2Q9BWV7 592 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 STOX2Q9P2F5 926 aaPredicted RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 MBD1Q9UIS9 605 aaPredicted RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 FABP12A6NFH5 140 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 CASKO14936 926 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 UGT2B17O75795 530 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 IL3P08700 152 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 ADORA3P0DMS8 318 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 CD9P21926 228 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 XKP51811 444 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 GBX1Q14549 363 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 PTGES3Q15185 160 aaKnown RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 CRTC2Q53ET0 693 aaPredicted RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 GPAT3Q53EU6 434 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 CLEC12AQ5QGZ9 265 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 PLEKHS1Q5SXH7 462 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 HSD11B1LQ7Z5J1 315 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 PTOV1Q86YD1 416 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 IQCF1Q8N6M8 205 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 CELF5Q8N6W0 485 aaKnown RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 GFM1Q96RP9 751 aaKnown RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 TTYH2Q9BSA4 534 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 ATP6V1HQ9UI12 483 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 ITM2BQ9Y287 266 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 MAN2B2Q9Y2E5 1009 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 SLC10A3P09131 477 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 GPX2P18283 190 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 EIF2DP41214 584 aaKnown RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 TMEM115Q12893 351 aaPredicted RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 LAIR1Q6GTX8 287 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 ZNF517Q6ZMY9 492 aaPredicted RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.39□□□□□ -0.59
MSH6-204ENST00000445503 WDR48Q8TAF3 677 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 CRELD1Q96HD1 420 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 CPNE5Q9HCH3 593 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 PSORS1C1Q9UIG5 152 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms