RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 CCDC115Q96NT0 180 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 KCNC2Q96PR1 638 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 PANX1Q96RD7 426 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 KCTD14Q9BQ13 255 aaPredicted RBP13.38□□□□□ -0.27
GPNMB-203ENST00000409458 ZFYVE21Q9BQ24 234 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.38□□□□□ -0.27
GPNMB-203ENST00000409458 S100A14Q9HCY8 104 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 PRDM7Q9NQW5 492 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 TEX10Q9NXF1 929 aaPredicted RBP13.38□□□□□ -0.27
GPNMB-203ENST00000409458 SUSD2Q9UGT4 822 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 EGFL7Q9UHF1 273 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 BTNL2Q9UIR0 455 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 FBXO4Q9UKT5 387 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 RNF215Q9Y6U7 377 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 SDK1Q7Z5N4 2213 aa13.38□□□□□ -0.27
GPNMB-203ENST00000409458 LOC105369274A0A096LPK9 316 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 LOC102723532A0A0G2JNH3 316 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 RNASET2O00584 256 aaKnown RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 FKBP6O75344 327 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 CPSF4O95639 269 aaKnown RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 ST6GAL1P15907 406 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 DDCP20711 480 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 HIST1H1TP22492 207 aaPredicted RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 RXRGP48443 463 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 RAB8AP61006 207 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 STXBP1P61764 594 aaKnown RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 MRPS22P82650 360 aaKnown RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 RGS1Q08116 209 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 BNIP2Q12982 314 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 SIM2Q14190 667 aaPredicted RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 TRIM40Q6P9F5 258 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 TICAM1Q8IUC6 712 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 OR4N4Q8N0Y3 316 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 ARL10Q8N8L6 244 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 OR8K5Q8NH50 307 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 MTERF3Q96E29 417 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 GBP5Q96PP8 586 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 SEMA6CQ9H3T2 930 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 PIF1Q9H611 641 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 IL21RQ9HBE5 538 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 MIEF1Q9NQG6 463 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 CSNK1G3Q9Y6M4 447 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 PRSS51A0A1B0GVH4 220 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 H0YGG7 62 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 ANP32DO95626 131 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 C1QCP02747 245 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 SLC35G6P0C7Q6 338 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 ZNF888P0CJ79 500 aaPredicted RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 CDH3P22223 829 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 ATP5A1P25705 553 aaKnown RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 CERS1P27544 350 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 EPHA8P29322 1005 aaPredicted RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 SOX11P35716 441 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 GSTM5P46439 218 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 TRPC1P48995 793 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 ARRB1P49407 418 aaPredicted RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 ARFIP1P53367 373 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 OR4D2P58180 307 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 ARF3P61204 181 aaPredicted RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 TRA2BP62995 288 aaKnown RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 RELAQ04206 551 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 SLC14A1Q13336 389 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 ANXA8L1Q5VT79 327 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 PEAR1Q5VY43 1037 aaPredicted RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 IRGCQ6NXR0 463 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 AAGABQ6PD74 315 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 KLHL35Q6PF15 583 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 CYP2R1Q6VVX0 501 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 CEP68Q76N32 757 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 SPATA24Q86W54 205 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 SLC35F3Q8IY50 421 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 C19orf47Q8N9M1 422 aaKnown RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 ZCCHC10Q8TBK6 192 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 GAL3ST3Q96A11 431 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 THAP11Q96EK4 314 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 ATAD3AQ9NVI7 634 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 STX18Q9P2W9 335 aaKnown RBP13.37□□□□□ -0.27
GPNMB-203ENST00000409458 BCAP29Q9UHQ4 241 aa13.37□□□□□ -0.27
GPNMB-203ENST00000409458 RHPN2P1A8MT19 583 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 H3BNX3 289 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 ARPC2O15144 300 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 NVLO15381 856 aaKnown RBP13.36□□□□□ -0.27
GPNMB-203ENST00000409458 HCRTR1O43613 425 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 FAM58BPP0C7Q3 252 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 ALDH9A1P49189 494 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 GFERP55789 205 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 AP2B1P63010 937 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 SLAMF1Q13291 335 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 GAB1Q13480 694 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 HEPACAMQ14CZ8 416 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 MRM1Q6IN84 353 aaKnown RBP13.36□□□□□ -0.27
GPNMB-203ENST00000409458 FAM92BQ6ZTR7 304 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 DHFR2Q86XF0 187 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 PTRH1Q86Y79 214 aaKnown RBP13.36□□□□□ -0.27
GPNMB-203ENST00000409458 C10orf111Q8N326 155 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 ZCCHC7Q8N3Z6 543 aaKnown RBP13.36□□□□□ -0.27
GPNMB-203ENST00000409458 ACOT4Q8N9L9 421 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 FAM47BQ8NA70 645 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 VPS37AQ8NEZ2 397 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 OR4A15Q8NGL6 344 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms